Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
FOLH1	2346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	49207240	49207240	+	Silent	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGTAACCTGGTGTGAGAGGGT	0.428	14	33
OR5D14	219436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55563532	55563532	+	Silent	SNP	G	G	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ATGCTCTCCGGTTAAACTTCT	0.502	37	191
APOA1	335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	116707048	116707048	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCCCAGAACTCCTGGGTCACA	0.592	23	88
IRAK3	11213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	66638280	66638280	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	AACATCCTTTTGGATGATCAG	0.393	18	55
KERA	11081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	91449807	91449807	+	Silent	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CAGGAATGGTTTCTATCAGGT	0.348	13	80
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	94975589	94975589	+	Silent	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ACTGGTTTCCGTTACTGTCGG	0.592	24	107
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	26411309	26411309	+	Silent	SNP	C	C	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	AGATTTTCACCGCTTTGCCGC	0.498	61	121
MYO16	23026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	109318372	109318372	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TACTATGAGCGCGAGAAGGCT	0.527	14	45
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	40914116	40914116	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GCAGAGCCTGTCAAATCCTTT	0.358	10	50
TUBGCP4	27229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	43695930	43695930	+	Missense_Mutation	SNP	C	C	T	rs149549954	by1000genomes	TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	AGTTTTTGTTCGCTGGTCAGT	0.527	23	21
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu	37	15	51260560	51260560	+	Missense_Mutation	SNP	T	T	G			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GAGGAAAAGCTTTCTCAGGAA	0.373	6	15
ACSM1	116285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	20635526	20635526	+	Silent	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGACAATAAAGGCCTTCACCA	0.473	22	79
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7643864	7643864	+	Silent	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TTGCCTCCCGCGAGGTGCGGC	0.672	20	129
DNAJC7	7266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40140910	40140910	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GAGTGCTTTGGCATTCTACAG	0.423	51	96
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61987091	61987091	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CAGCTGCCCTCCACAGAGCGG	0.632	42	73
LGALS3BP	3959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76967757	76967757	+	Silent	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	AGGTGCTCTTCGAGCTGTTGG	0.612	25	55
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	21489195	21489195	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCCTTGGGAAACATCTCTGAC	0.453	13	73
TRAPPC8	22878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	29433858	29433858	+	Missense_Mutation	SNP	G	G	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCCAGTGTTTGCTACTACTTG	0.328	10	42
S1PR2	9294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10334891	10334891	+	Silent	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GTCTTGAGCAGGGCTAGCGTC	0.617	15	36
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu	37	19	37676803	37676803	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TGTCTCTCTCCAGTGTGAATT	0.383	18	109
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40368357	40368357	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GCCTGGCAGGCGGCCACGTAG	0.647	32	293
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	4832380	4832380	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CAGCCACCAGCGGAAGACCAA	0.607	11	69
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	9794036	9794036	+	Missense_Mutation	SNP	A	A	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TTACCTGTGAAGGTCATGCCC	0.612	19	97
SPRR2G	6706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	153122438	153122438	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ATCCTGGCATGGTGGAGGTGG	0.567	23	120
CD244	51744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	160811431	160811431	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CTGGTGACCTCCAGGCAGTAG	0.453	26	102
RXRG	6258	hgsc.bcm.edu;broad.mit.edu	37	1	165398112	165398112	+	Missense_Mutation	SNP	A	A	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCACTGGGGTATCTGTGTAGC	0.607	5	66
SELE	6401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	169697059	169697059	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GACAGCATCGCATCTCACAGC	0.498	34	137
EDEM3	80267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	184695449	184695449	+	Silent	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCAAGGTACCTGCACAAGCTG	0.388	15	61
GPR137B	7107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	236341829	236341829	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CGTCTCTGTGCGAGTGGCCAT	0.478	58	180
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	237804239	237804239	+	Missense_Mutation	SNP	C	C	G			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ACATGGGGAACGCGATCATGA	0.443	8	50
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	60679728	60679728	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TAAGGGCTCTCGAGCTTCCAT	0.557	38	119
RND3	390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	151326607	151326607	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGCTCTCTGTGATTTGTTCCG	0.458	34	125
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ATAAGCATGACGACCTATGAT	0.393	18	74
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	49691512	49691512	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCTACACAGACGCCAAGTCCA	0.622	11	72
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	49694614	49694614	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCACTGCAAACGGAGGAGCAG	0.632	14	41
CACNA2D3	55799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	54596855	54596855	+	Missense_Mutation	SNP	G	G	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGGTTTATTGGTCTGAATCTC	0.403	10	40
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	25849135	25849135	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GCGCGTACTATCACTGCAGAT	0.408	9	73
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	77661578	77661578	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCCTCGCACCCGCACACATCC	0.692	5	33
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	79400621	79400621	+	Missense_Mutation	SNP	T	T	G			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGCTCTGATTTTAAATCTAGA	0.463	15	41
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	120214081	120214081	+	Missense_Mutation	SNP	T	T	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ATATGAATGATGAAAGACATA	0.393	9	50
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	121698363	121698363	+	Missense_Mutation	SNP	A	A	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCGGATATGAACTCTGAGTGT	0.383	35	155
GMDS	2762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	1726688	1726688	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCCACAGTCACGTGAACTTTG	0.507	37	194
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	46826760	46826760	+	Silent	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TGTTGGCAAGCCTGAAGTTCC	0.478	16	114
NT5E	4907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	86203685	86203685	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TTAATATTTCTTTCACTTTGG	0.353	14	103
RNGTT	8732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	89563379	89563379	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TAAATGCATACGAAGATCTTT	0.289	13	108
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	130761742	130761742	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCGGCTTTATTCCCCATCTGG	0.478	61	93
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	114282537	114282537	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GAAGACAATGGCATTAAACAT	0.428	35	61
WNT2	7472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	116960776	116960776	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ACACAGCTGCCGCTGGCTGCT	0.597	10	37
AKR1B10	57016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	134212705	134212705	+	Silent	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCAAGATGCCCATTGTGGGCC	0.502	19	97
POLR3D	661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	22107627	22107627	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCTGGCTGACCTGACAGAGGG	0.542	36	59
DOCK5	80005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	25154057	25154057	+	Missense_Mutation	SNP	G	G	C			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGTGGTGCGAGATGACAATGG	0.512	4	20
NRG1	3084	hgsc.bcm.edu;ucsc.edu	37	8	32600199	32600199	+	Missense_Mutation	SNP	A	A	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCAGGTGCCCAAATGAGTTTA	0.423	39	205
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	41543690	41543690	+	Missense_Mutation	SNP	C	C	T	rs138642972	byFrequency	TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TTGGCCTTCACGGATGACCCA	0.522	29	81
CLVS1	157807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	62371030	62371030	+	Silent	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CTCACACATCCTATAATGCAA	0.502	24	55
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	137591840	137591840	+	Silent	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCATCTACAACGAGCAGGGTA	0.587	29	131
GYG2	8908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	2799186	2799186	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGAGGAAGGCCGTATCGACTA	0.572	7	32
PRPS2	5634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	12838861	12838861	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GCCTTTGAGGCTGTTGTCGTC	0.483	19	76
RS1	6247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	18660177	18660177	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GCAATGCGGACGTGCCAGCCC	0.657	28	70
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	24830876	24830876	+	Silent	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ACGCTGCTCTGGTTGTTGAGC	0.393	24	50
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	34962025	34962025	+	Silent	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	AGCTGGAAGACGCACGGGCTC	0.537	21	60
FAM120C	54954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	54209051	54209051	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GATCAGTTGCGCTGTCTGCCG	0.721	7	17
USP51	158880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	55514135	55514135	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ATGAAAAAGCGAAGACATTTC	0.438	15	48
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	73963361	73963361	+	Missense_Mutation	SNP	G	G	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CTTGGGGCAGGTAGTAAAGAC	0.463	17	72
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	109459855	109459855	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GCTATCTTTAAGGGCACTGTT	0.378	21	101
CFP	5199	broad.mit.edu;ucsc.edu	37	X	47487019	47487019	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCAGGGCCCCCAGCCAGACCA	0.632	7	17
OBSCN	84033	broad.mit.edu;ucsc.edu	37	1	228404888	228404888	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GATGTGGGGACGCGGCACCGG	0.652	15	113
ZDBF2	57683	broad.mit.edu;ucsc.edu	37	2	207169761	207169761	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	ATTGGTCAGGCTACAAATAAT	0.423	9	37
SP100	6672	broad.mit.edu;ucsc.edu	37	2	231367785	231367785	+	Silent	SNP	A	A	G			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCTCAGGAAGAAAAGCCAACA	0.289	18	92
SERPINB11	89778	broad.mit.edu;ucsc.edu	37	18	61387343	61387343	+	RNA	SNP	A	A	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TGGCAAAATAAATTTCAAGTA	0.348	8	33
RP4-604K5.1	0	broad.mit.edu;ucsc.edu	37	1	87369113	87369113	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GATGAAAACTCTGCCCCAAAA	0.418	12	20
OR9G1	390174	broad.mit.edu;ucsc.edu	37	11	56468417	56468417	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCCTTGGTGGAGCTGGCCTGT	0.463	29	130
ADAMTS18	170692	broad.mit.edu;ucsc.edu	37	16	77401350	77401350	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TTCTTGCGTCGTCCACAAAAA	0.443	20	78
PCSK2	5126	broad.mit.edu;ucsc.edu	37	20	17446133	17446133	+	Missense_Mutation	SNP	G	G	T			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TGGTGAAAATGGCTAAAGACT	0.567	6	48
CISH	1154	broad.mit.edu;ucsc.edu	37	3	50645154	50645154	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TGCAGGCTGCGGGCACTGCTT	0.622	23	104
HTR1E	3354	broad.mit.edu;ucsc.edu	37	6	87725427	87725427	+	Silent	SNP	C	C	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GGGCCATCACCAATGCTATTG	0.562	18	129
TNXB	7148	broad.mit.edu;ucsc.edu	37	6	32049264	32049264	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CTCATCCCCCGCAACAGGCAC	0.617	4	19
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7577105	7577105	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	GTCTCTCCCAGGACAGGCACA	0.552	38	13
EMILIN2	84034	broad.mit.edu;hgsc.bcm.edu	37	18	2891806	2891806	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	CCAGGGAAAGCCTCATGGGAT	0.502	23	62
CYTH4	27128	broad.mit.edu;hgsc.bcm.edu	37	22	37705324	37705326	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-CS-6665-01A-11D-1893-08	TCGA-CS-6665-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	682d5b5e-3569-403c-b31c-887bd0aa26a5	c4574016-bc61-4fb5-92c6-efccec8cdc5d	TCACTCACACCTTCTTCAATCCA	0.567	45	80
