Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	62256122	62256122	+	Missense_Mutation	SNP	A	A	C			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TGAAATCAATAATGTCACTAT	0.353	7	39
SMAD3	4088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	67457635	67457635	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	GATCCCGGCCGAGTTCCCCCC	0.602	56	81
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	67006756	67006756	+	Splice_Site	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CTCCCACCCAGGGACCCCAAT	0.602	30	47
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577141	7577141	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	GCTGTTCCGTCCCAGTAGATT	0.517	4	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577142	7577142	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CTGTTCCGTCCCAGTAGATTA	0.517	4	0
KRT34	3885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39535942	39535942	+	Silent	SNP	G	G	A	rs144246640	byFrequency	TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CCACCTCCACGTTGAGGCGGT	0.557	13	18
REXO1	57455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1828027	1828027	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CTTGGCGGCCCGCTCATCCCG	0.652	10	14
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	33535237	33535237	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TTCTGCAATTTACTCCGGCCG	0.483	16	29
CYP4A11	1579	hgsc.bcm.edu;broad.mit.edu	37	1	47395834	47395834	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CTCCTGAGACGCAGGTGGATT	0.587	18	27
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	114453833	114453833	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	GAGTCCTCGGCGCCTGGAGTT	0.532	19	19
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	179819995	179819995	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	GCCAGCAGTCGCCTCCTCAGT	0.542	24	36
TLK1	9874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	171871388	171871388	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	GTTTATTCTTTTCAGCTCACG	0.378	8	43
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	ATAAGCATGACGACCTATGAT	0.393	14	22
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	212587211	212587211	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	ACAAAGGTTTGGGGACACTGA	0.383	14	13
FEZF2	55079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	62355877	62355877	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TTGCCGCAAGTGGCGCACGTG	0.527	43	68
FARS2	10667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	5369186	5369186	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	AACTTTGACAGCCTGCTCATC	0.557	17	18
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	158516963	158516963	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CAGAGCAACAGCCAGCTTCTC	0.642	9	10
FGL2	10875	hgsc.bcm.edu;broad.mit.edu	37	7	76826042	76826042	+	Silent	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CTCTTGGTCAGAAGATGAATT	0.408	5	72
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	94056997	94056997	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	GGTGGTTATGACTTTGGTTAC	0.532	34	61
FAM9B	171483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	8993591	8993591	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TCGGAAAAAACTCTGTCACAA	0.328	11	22
ATRX	546	hgsc.bcm.edu;ucsc.edu	37	X	76907606	76907606	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TTAGTTACCTCTCTCAATTTT	0.438	24	38
MORC4	79710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	106185949	106185949	+	Silent	SNP	T	T	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	AGGATTCAACTGCTTTTCGTC	0.512	42	62
SASH3	54440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	128926408	128926408	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	AGTCCACACCGACTTCACTCC	0.622	27	169
SLC9A3	6550	broad.mit.edu;ucsc.edu	37	5	491957	491957	+	Silent	SNP	G	G	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TACCCACGACGGCGTACAACA	0.642	4	9
GNG12	55970	broad.mit.edu;hgsc.bcm.edu	37	1	68171150	68171151	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	GATGATGCAAGTTTTTTTATCC	0.436	23	39
RBM27	54439	broad.mit.edu;hgsc.bcm.edu	37	5	145608531	145608531	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	CCAGCAGAGGAAGAACGAGAT	0.418	27	39
NETO1	81832	broad.mit.edu;hgsc.bcm.edu	37	18	70526115	70526116	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TCTCCATCAGCAAAAAATTTAA	0.342	14	21
TP53	7157	broad.mit.edu	37	17	7577143	7577143	+	Silent	SNP	C	C	T			TCGA-DB-A4X9-01A-11D-A26M-08	TCGA-DB-A4X9-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eea26f3f-6798-4b36-8e5c-a1de8c55f666	59d8d896-b937-4a7b-b503-f112f5570356	TGTTCCGTCCCAGTAGATTAC	0.522	3	0
