Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SCN4B	6330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	118014578	118014578	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	AAGATGGTGGCGTGGTGCTGG	0.547	25	37
DEPDC4	120863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	100656178	100656178	+	Nonsense_Mutation	SNP	A	A	C			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	AAATCATTTCATATCCTGGTC	0.279	17	56
OR4Q3	441669	hgsc.bcm.edu;ucsc.edu	37	14	20215861	20215861	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CAGGGCAAGAGCATCTCTTTT	0.448	6	49
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	57732851	57732851	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CTGCAGGTGGCAGACAACTTC	0.572	78	157
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	TCGGATAAGATGCTGAGGAGG	0.562	56	14
KRTAP17-1	83902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39471743	39471743	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	caagacgatccgcagcagctg	0.697	11	9
EIF3I	8668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	32688225	32688225	+	Silent	SNP	G	G	A			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CTGTGGCCAAGGACCCTGTGA	0.587	43	81
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	94655635	94655635	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	GAGGTTAACTGTTACCTATGG	0.423	6	30
TANK	10010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	162036208	162036208	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CTCAATAAAGCGTATGAAGCC	0.393	34	39
PRMT10	90826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	148575687	148575687	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	TACTTCCATCATCACATGGTC	0.358	21	49
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	179201423	179201423	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	AGCCTCCAGTTTCCACATGCA	0.607	30	55
HLA-F	3134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	29694761	29694761	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CCGGAGTCACAGTGTCTTGGG	0.512	71	99
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	36170045	36170045	+	Silent	SNP	C	C	A			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	TCTTTGGCCGCCTGCTCCGTG	0.542	23	45
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	65253352	65253352	+	Missense_Mutation	SNP	C	C	T	rs141882052	byFrequency	TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	TTATCTCTCACGACTTGGTTG	0.483	89	144
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	154194745	154194745	+	Silent	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CCCAGTCCTCCTCTTCAGCAG	0.453	22	45
CHMP1A	5119	broad.mit.edu;ucsc.edu	37	16	89713000	89713000	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CGCCCTCGGGCAGCTGGCTGA	0.677	7	11
IDH1	3417	broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	TAAGCATGACGACCTATGATG	0.398	33	49
KIAA1161	57462	broad.mit.edu;ucsc.edu	37	9	34371509	34371509	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CGGCAGCGGCCGGTAGGTGCT	0.677	10	23
ZNF525	170958	broad.mit.edu;ucsc.edu	37	19	53884333	53884333	+	Silent	SNP	T	T	C			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	TGGAGAAGTCTATCAACGATG	0.363	58	81
TRIM55	84675	broad.mit.edu;ucsc.edu	37	8	67086746	67086746	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CAGGCTGCAGCTCCAGCGAGT	0.478	40	97
RAB3GAP2	25782	broad.mit.edu;hgsc.bcm.edu	37	1	220344243	220344245	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CCTTTTCCTCCTTCTAATAACTT	0.389	20	41
SRPRB	58477	broad.mit.edu;hgsc.bcm.edu	37	3	133525498	133525500	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	CAGAGAGCTGTTCTTCTTGTTGG	0.399	20	52
CAND1	55832	broad.mit.edu;hgsc.bcm.edu	37	12	67704094	67704094	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DB-A4XF-01A-11D-A27K-08	TCGA-DB-A4XF-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2ec49f6-9196-4883-a531-bdf8835be7a0	379dc17f-9fbe-4979-a612-eed92084b79d	TTATGATATTAAGGTAAGATG	0.328	21	26
