Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SMCO3	440087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	14959571	14959571	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	TACTTCTTCCCGCCTTTTTGG	0.393	64	85
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	62214622	62214622	+	Missense_Mutation	SNP	C	C	A	rs115472982	by1000genomes	TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	GCAACAGCAGCCATTAGAGAA	0.378	17	95
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	63966612	63966612	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	CATGGCTTGCGCTCGTTCCAG	0.448	17	56
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	ATGGGCGTGCCTGCCAATGGT	0.632	51	56
CDH16	1014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	66950296	66950296	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	CCTGACAGCACGATCTGGCCT	0.622	15	29
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6707823	6707823	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	GCCCTCTGGGCGGTCTGCTGG	0.672	84	93
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	7809893	7809893	+	Silent	SNP	G	G	A	rs61742035		TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	TGATGGAGTCGTGCCAGTTCC	0.587	50	64
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	42553330	42553330	+	Missense_Mutation	SNP	G	G	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	ATCAGGAATCGATCGGATTGT	0.368	32	142
LRP2	4036	hgsc.bcm.edu;broad.mit.edu	37	2	170112638	170112638	+	Silent	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	CAAGTCCAAACGGATGTGTCA	0.373	6	55
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	14922122	14922122	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	CAGGAACTGCTATCTTCAGAG	0.532	40	39
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	37022199	37022199	+	Missense_Mutation	SNP	C	C	A			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	CGAACAAAAGCCATGAAGTGT	0.343	16	44
SIM1	6492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	100868815	100868815	+	Silent	SNP	G	G	A			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	GAGAGCTGCAGCCCTTTGTAT	0.507	12	23
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	91981897	91981897	+	Silent	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	CTGATACACTCAGCTTCCCAT	0.433	168	188
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	99045826	99045826	+	Missense_Mutation	SNP	T	T	G			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	AATGCAAATGTGAAAACCTTA	0.388	9	9
WISP1	8840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	134225313	134225313	+	Silent	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	AGGCTGCCATCTGTGACCCCC	0.617	55	87
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	123342218	123342218	+	Silent	SNP	A	A	G			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	TGAGCGTCCCAGGGACGGTGA	0.662	17	53
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	139412278	139412278	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	GTTCGAGACGCACTCGTTGAC	0.662	71	43
POF1B	79983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	84586012	84586012	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	CGTATTCTTACGGCTCAGATC	0.383	27	5
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	107823773	107823773	+	Missense_Mutation	SNP	G	G	T	rs104886070		TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	GGACTTCCTGGTGACCGAGGG	0.428	76	6
ZCWPW1	55063	broad.mit.edu;hgsc.bcm.edu	37	7	100014771	100014773	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	GGCTGGGCACAAGAAGTCTCTGC	0.419	22	79
NF1	4763	broad.mit.edu;hgsc.bcm.edu	37	17	29665752	29665755	+	Frame_Shift_Del	DEL	ACTT	ACTT	-			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	AGGACCTGACACTTACAACAGTCA	0.319	67	19
SYNRG	11276	broad.mit.edu;hgsc.bcm.edu	37	17	35902548	35902549	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	AGGACAAATGGAGAGAGTTTTC	0.455	21	98
MAP3K15	389840	broad.mit.edu;hgsc.bcm.edu	37	X	19380935	19380938	+	Frame_Shift_Del	DEL	CTCT	CTCT	-			TCGA-DB-A4XG-01A-11D-A27K-08	TCGA-DB-A4XG-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	512b5735-cba4-4d39-ba83-00df05dc3ce2	b62dc580-39c1-4ed8-9772-90735574c16c	GATTCTGGTACTCTCTCTCTTTTT	0.328	26	58
