Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	22012589	22012589	+	Silent	SNP	C	C	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	GTCCCCCACTCAGGTTGATGC	0.383	20	159
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	108938934	108938934	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TTCCACAATCGCACTTTCAAA	0.493	62	229
SNX20	124460	hgsc.bcm.edu;broad.mit.edu	37	16	50707432	50707432	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CTTGCCCAGCGCGTAGGCCAG	0.697	6	81
GJC1	10052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42882004	42882004	+	Silent	SNP	G	G	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	ATTAAATCCAGACGGAGGTCT	0.488	16	134
HAUS1	115106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	43700024	43700024	+	Silent	SNP	A	A	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	AATGTCTACAAGAGTAAGTAA	0.294	7	19
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	13248162	13248162	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	GGTCCTACTGCGGCGGCTCCT	0.647	9	94
ZNF85	7639	hgsc.bcm.edu;ucsc.edu	37	19	21132211	21132211	+	Silent	SNP	A	A	G	rs11665995	byFrequency	TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CTTTTAACCGATCTTCAACCC	0.363	6	30
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42791802	42791802	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CAACCGGACCGTCAGCAAGAT	0.617	11	69
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu	37	1	42046935	42046935	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	GAAGTGGGGGCATGGAGTATG	0.577	7	126
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	158548933	158548933	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	GTGGTGAAGGCCTTCTGCTTG	0.483	20	136
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	50312662	50312662	+	Missense_Mutation	SNP	T	T	C			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	AGGAAGATCATGTCGGCAGGG	0.448	7	47
UBASH3A	53347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	43833168	43833168	+	Silent	SNP	G	G	A	rs141710800		TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TGTACGAGGCGCTGAAGAGAG	0.547	21	207
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	41566476	41566476	+	Silent	SNP	T	T	C			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TCCATTGCCATCCTCCTGACC	0.428	10	66
SNRNP200	23020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	96956065	96956065	+	Splice_Site	SNP	T	T	C			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CTCCCCTACCTTGGCATTCTG	0.532	18	145
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	ATAAGCATGACGACCTATGAT	0.393	19	45
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209169012	209169012	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CACAGAACAGATAGCTGAAGA	0.403	18	57
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	114058203	114058203	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TGTGTGTCACCATGTGCTTGA	0.537	27	80
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TCATGGATTAGAAGATTTGCT	0.348	7	68
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	120192691	120192691	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	ACTGGATATGACACAGACAGC	0.423	11	81
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	9630017	9630017	+	Missense_Mutation	SNP	G	G	A	rs2234231	byFrequency	TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	GAGATCCAGCGGAGCCATTTT	0.378	22	75
PCDHGC5	56097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140871058	140871058	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CAACCTGCAGGTGAGCTCGGA	0.652	7	61
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	169435568	169435568	+	Missense_Mutation	SNP	T	T	C	rs145444170	byFrequency	TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CTGGAGCAGTTCTCACACGCC	0.448	7	65
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	87656896	87656896	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TGATGATTAAATTCAAAAAAT	0.274	7	14
BICD2	23299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	95481529	95481529	+	Silent	SNP	C	C	T			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	CCTCGGCGTGCTGGGCCTCAC	0.667	20	40
BEND2	139105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	18183208	18183208	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TGCTGGAAGCGACTGAGACCT	0.557	16	90
NEUROG3	50674	broad.mit.edu;ucsc.edu	37	10	71332578	71332578	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	TCAGTGCCAACTCGCTCTTAG	0.692	3	18
FUBP1	8880	broad.mit.edu	37	1	78430553	78430553	+	Splice_Site	SNP	A	A	G			TCGA-DB-A64V-01A-11D-A29Q-08	TCGA-DB-A64V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbd199b2-da43-4864-a647-3c36b2034f00	4047e4fc-39cc-4c30-bec3-fc4dffdf607c	AGTTAAGTTTACTTGAACTTT	0.368	5	46
