Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NAT10	55226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	34152413	34152413	+	Missense_Mutation	SNP	A	A	C	rs147641652		TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	CAGCTCCGTCAACAGAGCGCC	0.567	42	144
FOXJ2	55810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	8200512	8200512	+	Silent	SNP	G	G	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TCCCACCCTCGAACAACTACT	0.567	9	92
PZP	5858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	9317915	9317915	+	Silent	SNP	G	G	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	CCTTCCACTCGGTGATGGTGT	0.537	39	114
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	12483294	12483294	+	Silent	SNP	C	C	T	rs146158847	byFrequency	TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TTTCTGTAAACGGTATGGTTT	0.458	24	230
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	31348670	31348670	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	ACAAGCAGTGTCCACAGCACA	0.393	52	149
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577144	7577144	+	Missense_Mutation	SNP	A	A	C			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	GTTCCGTCCCAGTAGATTACC	0.522	16	37
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652		TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	GATGGGCCTCCGGTTCATGCC	0.572	50	46
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	35600456	35600456	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TTTCATCAATCGCTCTACCCA	0.423	98	301
VMP1	81671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	57851219	57851219	+	Missense_Mutation	SNP	G	G	T			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	AATTTGAAGAGATGCTGGAAC	0.438	14	107
SPIRE1	56907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	12493109	12493109	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TGATACAGGCCGCAGCTTTCT	0.458	13	102
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	13050007	13050007	+	Missense_Mutation	SNP	C	C	G			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	CAAATTCGTTCTCAGTTCCGG	0.527	4	28
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	39334685	39334685	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	ACAGCCAGAATAGATATCAGC	0.517	22	231
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	118523986	118523986	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	CTAGGCACACTTGAGGATTTC	0.343	32	203
C21orf2	0	hgsc.bcm.edu;ucsc.edu	37	21	45750795	45750795	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TCATCCTGGGCGCCGCTGCTG	0.677	8	25
TRABD	80305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	50636413	50636413	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	GAGCTGCCTCGGGCCTCTGAC	0.697	46	71
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	177017514	177017514	+	Missense_Mutation	SNP	C	C	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	GGTTCCAGAACCGGAGGATGA	0.502	19	161
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	207169636	207169636	+	Silent	SNP	G	G	A	rs143619911	by1000genomes	TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	AGGAAGGCACGCAGGAGGTTT	0.453	13	67
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	ATAAGCATGACGACCTATGAT	0.393	46	103
EXOC2	55770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	572531	572531	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TCACTGAAGAGGCTTCCATTA	0.438	14	81
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu	37	8	135614421	135614421	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	CTGTAGCTGGTCCCCCAGAGC	0.617	5	79
DIAPH2	1730	hgsc.bcm.edu;broad.mit.edu	37	X	96639008	96639008	+	Missense_Mutation	SNP	A	A	T			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TTAGAACGCCAGAAGAAAAAG	0.313	4	56
MID2	11043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	107084365	107084365	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TGCATCACCTGTGAGGTCTCC	0.562	26	31
BRF1	2972	broad.mit.edu;ucsc.edu	37	14	105752650	105752650	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	CAGGGTCTGCGCTCTCGACTC	0.587	3	36
TBX15	6913	broad.mit.edu;ucsc.edu	37	1	119428085	119428085	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	AGAAGAAGCCGAAGGGGATGG	0.478	4	31
F5	2153	broad.mit.edu;ucsc.edu	37	1	169529938	169529938	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	ATAGGTGTATTCTCGGCCTGG	0.517	42	297
EPHA4	2043	broad.mit.edu;ucsc.edu	37	2	222347239	222347239	+	Missense_Mutation	SNP	A	A	G			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	GGTGTAGTGGACCCCACTTCC	0.512	97	586
RBM33	155435	broad.mit.edu;ucsc.edu	37	7	155530752	155530752	+	Splice_Site	SNP	A	A	G			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	GTTACCTTTCAGTTTCAGGTG	0.468	38	137
RYR3	6263	broad.mit.edu;ucsc.edu	37	15	34130251	34130251	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5143-01A-01D-1468-08	TCGA-DH-5143-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f4bbefd2-808c-4646-8bee-3ab3b040b48b	ce04e1e1-0343-4378-b34e-203f88ead2a8	TGTGCTAAATTACTTCGAACC	0.468	73	208
