Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ZMYND11	10771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	285431	285431	+	Silent	SNP	A	A	G			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CTGATGCCCAATTGCTTCTCC	0.348	91	149
MRPL43	84545	hgsc.bcm.edu;ucsc.edu	37	10	102741298	102741298	+	Missense_Mutation	SNP	T	T	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	ACTGAACTGATATCTGAAGAA	0.398	48	213
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu	37	11	40136683	40136683	+	Missense_Mutation	SNP	A	A	G			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	ATTTGGAGTAATCCAAGATAC	0.493	188	171
CFL1	1072	hgsc.bcm.edu;broad.mit.edu	37	11	65623202	65623202	+	Splice_Site	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CTCGGGGGCCCTGGACAGAAA	0.542	6	89
ARNTL2	56938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	27542188	27542188	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CAACTTTCTTCTTTTGATATT	0.323	55	110
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	52698737	52698737	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CGCCTACCTCCGCAAATCAGA	0.597	204	253
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	53680351	53680351	+	Silent	SNP	A	A	G			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TCACAAAACTAGGTGGCCTCA	0.542	134	139
CTSG	1511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	25043477	25043477	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CGTTCCCGCCGGTCCCCCACA	0.617	42	51
EXOC5	10640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	57684716	57684716	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	ATGCCAGTATCCAATTTCATC	0.294	45	62
MAX	4149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	65544747	65544747	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	GATTTGGGCCCGGGATGCCTG	0.498	53	74
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	70989595	70989595	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	ATGAACCATACTGGCACACTT	0.463	269	413
TEX9	374618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	56686922	56686922	+	Missense_Mutation	SNP	C	C	G			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TATGAGACAGCAGCGAACAAT	0.284	12	79
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu	37	17	58133572	58133572	+	Silent	SNP	G	G	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TCATTGAAAAGTAGCCCCTTG	0.453	10	166
CLEC4M	10332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	7830088	7830088	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TGGCCATGGCGCCCTGGTGCT	0.632	96	117
ZNF506	440515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	19906098	19906098	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CATTTATAGCGTTTCTCTCCA	0.338	6	123
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	78429848	78429848	+	Splice_Site	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	GTCCCATCATCTTCAAAACAA	0.363	136	20
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	16360615	16360615	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TCTTCAAATTTTTCCTTCTCC	0.498	40	267
PREB	10113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	27355105	27355105	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CACCTGACATCGAGGCAGGAG	0.617	146	229
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	ATAAGCATGACGACCTATGAT	0.393	72	87
MKRN2	23609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	12613687	12613687	+	Missense_Mutation	SNP	A	A	G			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TGCCATCAGGAGTGGCCTTGA	0.627	57	59
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	39170636	39170636	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CGCATCACCATTGCCAACGTG	0.522	70	83
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	15937211	15937211	+	Silent	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TCCAGGACTGCGAGGTCTCCG	0.607	18	51
MTX3	345778	hgsc.bcm.edu;broad.mit.edu	37	5	79282781	79282781	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	ACCTCCAAGACTAAGCCTAAA	0.363	8	158
VPS52	6293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33235064	33235064	+	Silent	SNP	G	G	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TGAAAATGGTGTTCCTGCTGC	0.562	69	103
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	43023893	43023893	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	GATGATCCAGCGTTTCCGGCT	0.537	56	90
NOTCH1	4851	hgsc.bcm.edu;ucsc.edu	37	9	139393712	139393712	+	Splice_Site	SNP	C	C	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	GGATCAGGATCTGGGCAACAG	0.662	6	65
DLG3	1741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	69670626	69670626	+	Silent	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CCCCTGACTACGCCAGCAGTA	0.532	22	122
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	109444269	109444269	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	GGTCTGTATATGGTCCCATCC	0.373	147	178
GPC3	2719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	132887716	132887716	+	Silent	SNP	G	G	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TGCAGTAACCGCCACAGGGTT	0.483	194	196
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	150349210	150349210	+	Missense_Mutation	SNP	C	C	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CCTCTGGCCACCCTAAGCCCC	0.582	124	160
GDI1	2664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	153668416	153668416	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	TGACGTCTACCGGAAGTTTGA	0.577	311	551
DYX1C1	161582	broad.mit.edu;ucsc.edu	37	15	55731774	55731774	+	Silent	SNP	T	T	C			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CTTGTTTGTGTAGCCACTAGA	0.343	14	113
NOTCH1	4851	broad.mit.edu;ucsc.edu	37	9	139418369	139418369	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	GGCGTTCTTGCAGGGGGTGCT	0.677	3	15
AZU1	566	broad.mit.edu;ucsc.edu	37	19	831737	831737	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CACCCCCCTCGTCTGCGAGGG	0.706	21	25
ATRX	546	broad.mit.edu;ucsc.edu	37	X	76949414	76949414	+	Missense_Mutation	SNP	A	A	G			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CTCTGGCTGTACAATCACTGT	0.348	85	213
CIC	23152	broad.mit.edu;ucsc.edu	37	19	42799059	42799059	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-5144-01A-01D-1468-08	TCGA-DH-5144-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8626578-2105-4176-ad8c-5a2327743fa0	19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7	CCGTGAGGTGCGCCAGAAGAT	0.632	46	13
