Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	418583	418583	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	ATGCACAAGGCCACGTGCTAG	0.627	23	39
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	48953728	48953728	+	Splice_Site	SNP	A	A	G			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GTTTGTTTGTAGCGATACAAA	0.333	10	8
GMPR2	51292	hgsc.bcm.edu;broad.mit.edu	37	14	24707610	24707610	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GGCTGAGTACAGGTATGTGTG	0.512	3	44
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	23889301	23889301	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	AACCTCAGGACAAGCATCTTG	0.522	20	37
IST1	9798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	71958718	71958718	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GCACAGATTGTTGGTGAGTAG	0.418	23	10
NF1	4763	hgsc.bcm.edu;broad.mit.edu	37	17	29497016	29497016	+	Splice_Site	SNP	G	G	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CTCCTGAAGGGTAAGTTTAAA	0.289	14	35
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	29677227	29677227	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	TGAAGAAGTTCGAAGTCGCTG	0.363	41	80
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	73096729	73096729	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GTGTGTGCGGCATCAGGTGAC	0.617	291	546
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	29099849	29099849	+	Silent	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	TCACCGCCCCCGTGGCTCTTC	0.443	33	46
CCDC159	126075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11462650	11462650	+	Splice_Site	SNP	G	G	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CAGAAGCTCCGTGAGTTCCTG	0.612	8	14
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	21720518	21720518	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	ACTTACTCAACATAAGAAAAT	0.353	14	45
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40998962	40998962	+	Splice_Site	SNP	G	G	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	AGACAGCTGGGTAAGCACCCC	0.522	6	18
FLG	2312	hgsc.bcm.edu;broad.mit.edu	37	1	152278733	152278733	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CCCTCTGATTGTCCCTGGACT	0.577	101	402
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152382287	152382287	+	Missense_Mutation	SNP	C	C	T	rs150002541	by1000genomes	TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	TGTCACACAGCGCCTTGGGTG	0.602	17	40
C4BPB	725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	207265091	207265091	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GACCACTACATCCTCAAGGGC	0.493	8	59
OBSCN	84033	hgsc.bcm.edu;ucsc.edu	37	1	228486408	228486408	+	Silent	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CGGCCACGCTCACTGTCAGGG	0.547	24	33
UCKL1	54963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	62577859	62577859	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CCAGGGCGGCCGCCCGGCGGT	0.677	17	15
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	21226162	21226162	+	Silent	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	ATTCCCGGACCCTCAACTCAG	0.393	114	268
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	191301884	191301884	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CGTCTTCGGCGTTCTCATGAC	0.512	19	31
SLC25A38	54977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	39431997	39431997	+	Splice_Site	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GGGATGTCCCCTGTAAGCTGC	0.478	13	58
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	55956204	55956204	+	Silent	SNP	C	C	T	rs147630437		TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CGTTCTTCTCCGATAAGAGGA	0.428	27	53
SEC31A	22872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	83763471	83763471	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	AAGAGGCCTGGTGCTGTGCTG	0.552	10	16
RXFP1	59350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	159526262	159526262	+	Silent	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CTCCTGATTGCTTCAAGAATT	0.299	11	30
ZFP42	132625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	188924355	188924355	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GAAAGAGCTTCCACAAAAGAT	0.418	46	80
PCDHB13	56123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140594885	140594885	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CTGAAATCCGCGGAAAACTTT	0.453	25	56
GRM6	2916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	178418950	178418950	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	ACACATAGTTCCATCCCAGTG	0.622	10	24
GRM6	2916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	178418951	178418951	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CACATAGTTCCATCCCAGTGC	0.627	10	23
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	12122495	12122495	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	ATCAAAGCAAGTGTTTCTTCT	0.403	80	36
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	47846810	47846810	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	AGATGATATCATTTCGAAAAT	0.423	44	13
PRDM13	59336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	100062566	100062566	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	ACGACAGTGACGTGGACGTCT	0.701	24	15
COG5	10466	hgsc.bcm.edu;broad.mit.edu	37	7	107167729	107167729	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	TCTACTTCCCCCTTGCAGTTG	0.338	17	15
CXorf22	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	35985795	35985795	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CTTGGCAAAACGCAAGAATTA	0.393	18	54
APEX2	27301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	55033526	55033526	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GCTGTCCCCAAGCCTCTCCTG	0.587	9	18
OPHN1	4983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	67283790	67283790	+	Silent	SNP	G	G	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GTCCATTGGTGGCCTTTGGGG	0.607	15	27
ACSL4	2182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	108921235	108921235	+	Silent	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	AGAGTGTAAGCGGAGAAGAAT	0.428	57	88
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	125685930	125685930	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CGGGTCCATCCGCCACAGCGC	0.657	17	32
CXorf40B	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	149100914	149100914	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GCAGCTTGATTTTCTAGTTCC	0.473	39	70
MYO5A	4644	broad.mit.edu;ucsc.edu	37	15	52622645	52622645	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	GTTGACTGGTCGGATGGGTTC	0.418	58	99
NCKAP1L	3071	broad.mit.edu;ucsc.edu	37	12	54902315	54902315	+	Splice_Site	SNP	G	G	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	CATGGGCATGGGTGAGTTAAG	0.423	68	141
OR3A2	4995	broad.mit.edu;ucsc.edu	37	17	3181629	3181629	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	TTGAGTTGGGTGCTGGAGCAG	0.552	28	62
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89720803	89720804	+	Frame_Shift_Ins	INS	-	-	A	rs146650273		TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	ATCTAGTACTTACTTTAACAAA	0.327	57	24
