Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RRAS2	22800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	14303174	14303174	+	Silent	SNP	A	A	C			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GTTCATGGAAAGCTTGATCTA	0.348	19	73
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55433000	55433000	+	Missense_Mutation	SNP	C	C	T	rs146965889	byFrequency	TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GGCCTATGACCGCTACGTGGC	0.552	15	60
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	9004550	9004550	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TCAGTAGTCCGTGGGGAATCC	0.502	36	108
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	53187985	53187985	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CAGGTAGCTCCGCAGGTAGTT	0.532	31	116
MORN3	283385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	122091088	122091088	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	AACAGCTGGCCGTGGTCCAGA	0.607	9	35
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	126139203	126139203	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TATGGGGCTGGGGGATTCACA	0.463	16	62
LIG4	3981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	108863573	108863573	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	ATCTGCAAAAGGAACGTGAGA	0.358	12	53
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	81329142	81329142	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TGATCCTGGCGTCTTTCCACC	0.463	18	74
TRIM69	140691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45050860	45050860	+	Silent	SNP	T	T	C			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CCATGGAGTTTCTAAAGCTGC	0.463	14	41
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9046352	9046352	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	ATGAGTCAAAGTTGGAACAGT	0.478	14	77
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9090675	9090675	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TCTTGGCTATGTGGGTGCTGG	0.507	13	45
CEACAM5	1048	hgsc.bcm.edu;ucsc.edu	37	19	42213833	42213833	+	Missense_Mutation	SNP	T	T	G	rs112905632	byFrequency	TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GGTCGAGAGATAATATACCCC	0.443	45	206
EDN2	1907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	41948222	41948222	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CGGCGCCGGCGTCTTGGCGGG	0.642	9	26
SNX7	51375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	99157205	99157205	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TGATCATCCAACTTTAACATT	0.328	11	52
OR10J3	441911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	159283478	159283478	+	Silent	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TATTTATAAACGCAAAGGAAA	0.398	7	66
SLC45A3	85414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	205628648	205628648	+	Missense_Mutation	SNP	G	G	A	rs140263007	byFrequency	TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CCCGCAGAGCGCGGGTGGAGG	0.677	7	8
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	236766587	236766587	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	ACACTTCGCTCCAAGGTTTTT	0.418	15	50
RIPK4	54101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	43161994	43161994	+	Silent	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GCCACTTGGCGCACTCCTCTT	0.657	34	78
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	219868992	219868992	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GTCTTCCTTCGGCTGCTTGCC	0.532	30	75
CX3CR1	1524	hgsc.bcm.edu;ucsc.edu	37	3	39307545	39307545	+	Silent	SNP	G	G	A	rs17038679	by1000genomes	TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CTGCCCAGACGCCTAGGCTGA	0.552	20	65
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	97868995	97868995	+	Missense_Mutation	SNP	G	G	A	rs148799830		TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TGGGCCCCTCGCCTTCATGTA	0.413	18	41
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	10445887	10445887	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TACAGAGCGACGATGTGCACT	0.448	22	99
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	55139758	55139758	+	Silent	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CAAACATCATCACGGAGATCC	0.498	28	32
AGA	175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	178361475	178361475	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TTCATCAGGACTTCCTCCAAA	0.493	30	94
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	161324340	161324340	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	ATAGCCTTCCCGCTGCTATTT	0.423	34	84
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	117248565	117248565	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TCCCGGCCACCGTCTAGCTAT	0.517	8	38
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	161006128	161006128	+	Silent	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GTGTCATAGACGACCAAGACT	0.448	31	159
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	88965634	88965634	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GTAGAGGGAAATATAAACTCT	0.353	16	69
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu	37	7	94038721	94038721	+	Missense_Mutation	SNP	G	G	A	rs145693444	byFrequency	TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CTCCGGCCCCGTTGGACCTCC	0.502	33	94
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	131859587	131859587	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	AACAGCACCCGCATGGTGTAA	0.582	36	125
TRPV6	55503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142573227	142573227	+	Silent	SNP	T	T	C			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TCACCTGAAGTAGCTTCTGCT	0.572	15	60
RNF32	140545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	156437272	156437272	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CTTCAACTTCGAAATCTTTCA	0.328	12	42
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	32621577	32621577	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GAGTATGAAACGACCCAAGAG	0.552	9	21
TMEM252	169693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	71155606	71155606	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CAAATAGGCCGCAATCAGGCT	0.537	9	20
LMX1B	4010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	129453250	129453250	+	Silent	SNP	C	C	T			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GCAAGGGCGACGAATTCGTGC	0.637	4	26
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	3228242	3228242	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CAGGAGAAACGTCCCTGCCCA	0.592	34	60
HDX	139324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	83724443	83724443	+	Silent	SNP	A	A	C			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	ATGTCCAAGAAGACTGCTGGC	0.428	38	94
CXorf57	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105855370	105855370	+	Silent	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TAGATTGGCCGAACCCTGAGA	0.572	28	88
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	134994995	134994995	+	Missense_Mutation	SNP	C	C	T	rs139129211	by1000genomes	TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CTCGAGAAGGCGCTTAAAGAA	0.368	7	35
PNMA5	114824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	152159963	152159963	+	Silent	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	ccttggcattgtcttccctcc	0.522	44	111
MTCP1	4515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	154293907	154293907	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TAAATGATGCTGTATCTGCCA	0.453	34	83
GABRB3	2562	broad.mit.edu;ucsc.edu	37	15	27184436	27184436	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	AGGTCTCCTCGTGCCTCCCAC	0.582	18	43
RECK	8434	broad.mit.edu;ucsc.edu	37	9	36102223	36102223	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TGGATACATACCTCAGTAAGT	0.343	10	55
FAM83B	222584	broad.mit.edu;ucsc.edu	37	6	54735366	54735366	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	TGACTTAGGCTGGCCATATGT	0.458	23	84
OR2L8	391190	broad.mit.edu;ucsc.edu	37	1	248112581	248112581	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	AGAGTGTGTGTGCTGATGATA	0.448	50	139
KALRN	8997	broad.mit.edu;ucsc.edu	37	3	124393414	124393414	+	Silent	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	GCATCCTGGCGCCCCTCACCA	0.592	3	16
RAB11FIP1	80223	broad.mit.edu;ucsc.edu	37	8	37729072	37729072	+	Missense_Mutation	SNP	G	G	T	rs146365728		TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	AGGCGGGCTTGGACTCCCATT	0.542	63	195
PPP1R17	10842	broad.mit.edu;ucsc.edu	37	7	31746856	31746856	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CAAAGCAATCGTGGAAGATGA	0.433	5	28
C1orf158	0	broad.mit.edu;ucsc.edu	37	1	12820859	12820859	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CCTCCCCATCGCCTGCATCCT	0.577	7	36
IGHV1-58	28464	broad.mit.edu;ucsc.edu	37	14	107078546	107078546	+	RNA	SNP	G	G	A			TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	CGTTGTCCACGAGCCTGTCGC	0.532	17	59
MECOM	2122	broad.mit.edu;hgsc.bcm.edu	37	3	168833251	168833251	+	Frame_Shift_Del	DEL	G	G	-	rs141957464	byFrequency	TCGA-DU-5854-01A-11D-1705-08	TCGA-DU-5854-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2defa773-3cbd-4c3c-9437-5f6db860284e	fb3c685f-0ff5-4ea1-b28f-1b037edc40db	ATTCGACGTTGCTTCCTTTTT	0.488	15	34
