Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR10S1	219873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	123847515	123847515	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GTTGAGCATTGGAGTTACGAT	0.542	87	65
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	13716187	13716187	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TCCATGAATCGGCCCTTGTCT	0.597	29	31
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu	37	15	24921723	24921723	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	CTTGGAAGGCCCTGCCATGCC	0.622	11	0
ADAM10	102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	58925546	58925546	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TTCACATATTCCTCCAGAGCT	0.343	18	6
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	50136288	50136288	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GAAAGAGCCTCGATTCAAATT	0.378	34	88
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	26107803	26107803	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TTGGGATGTTCCATGGCCACC	0.597	15	30
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48669423	48669423	+	Silent	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	ATTTGCTGGTCGCCATTCTGG	0.572	18	25
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	11177096	11177096	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	CAACCATTGACATGACCGCTA	0.383	34	13
INSL5	10022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	67266844	67266844	+	Missense_Mutation	SNP	G	G	A	rs146406445	byFrequency	TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TCCTTGCTCCGCACTTCTGAG	0.453	12	21
ASB17	127247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	76387892	76387892	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GTAGAGTACTATTGTTAAGAC	0.358	23	9
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152085364	152085364	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GCGATCTTGTAACAGGCTCTC	0.542	98	77
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	157766909	157766909	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	CCATATGTGTCCCCAGGGTTT	0.403	29	76
KRTAP10-10	353333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	46057415	46057415	+	Silent	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	AGAGCTGCTGCGAGCCCTGCT	0.682	50	84
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179614115	179614115	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GAAGCACCATGCACAAATCTG	0.403	66	72
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	ATAAGCATGACGACCTATGAT	0.393	23	44
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	233028242	233028242	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	AGAGTATGGCGTGGATTTCTC	0.453	15	37
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	114069362	114069362	+	Silent	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GGAAAGGCTTGGGGCCACTGC	0.627	31	52
BFSP2	8419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	133119336	133119336	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	AACACAACTGCGGATGCACCT	0.607	20	28
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	90000251	90000251	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GGATGACAACATTCCTGAGGA	0.333	5	5
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	103180840	103180840	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TAGGAGCACGGGTTGACTCCT	0.488	52	40
MKRN1	23608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	140154990	140154990	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	CCTCCAAATGGGCAGCTCCCA	0.483	10	146
PROSC	11212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	37623846	37623846	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TGGCCACCTACAGAAACAAAA	0.358	54	98
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	119945444	119945444	+	Silent	SNP	G	G	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GAGGACATTTGTCACACAACA	0.483	94	133
GLIS3	169792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	3829411	3829411	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	AGGCACCACACTGCAGGAGCT	0.542	39	1
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	32630690	32630690	+	Silent	SNP	A	A	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	AGTTGAGTCAAATGCTCATCA	0.433	149	11
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu	37	Y	5605958	5605958	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GGTGATTCCCCCATTATGGAA	0.373	56	5
CRAT	1384	broad.mit.edu;ucsc.edu	37	9	131857756	131857756	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GCCAGGCGGGCGGCGTTGGTC	0.667	15	19
CABIN1	23523	broad.mit.edu;ucsc.edu	37	22	24567940	24567940	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	GAAGCTACCCCCAGCATGGCC	0.647	9	14
TRAV41	28640	broad.mit.edu;ucsc.edu	37	14	22789020	22789020	+	RNA	SNP	A	A	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	AAGAAGAAGCATGGAAGATTA	0.488	10	21
FNIP1	96459	broad.mit.edu;ucsc.edu	37	5	131013435	131013435	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TGAGTCTTTGCCAACATGTCC	0.383	34	61
QSER1	79832	broad.mit.edu;hgsc.bcm.edu	37	11	32955602	32955603	+	In_Frame_Ins	INS	-	-	ATT			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	TCTTCAAAACCATTACAACAAC	0.376	39	111
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42796321	42796322	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	CTGGACCCACCTCTCAGCCTCA	0.663	24	9
