Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	92085432	92085432	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	TAATGCTACCGTGTATGAGAA	0.488	5	39
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	64457244	64457244	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GTTCTCACAACTGGGCTTCAG	0.378	29	131
NLGN2	57555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7318155	7318155	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GATCCTCTCCCACCATTCAGA	0.612	13	50
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578502	7578502	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CCACAGCTGCACAGGGCAGGT	0.587	24	36
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579362	7579362	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CCCAGACGGAAACCGTAGCTG	0.612	23	41
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579363	7579363	+	Silent	SNP	A	A	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CCAGACGGAAACCGTAGCTGC	0.617	23	39
DLGAP1	9229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	3879577	3879577	+	Silent	SNP	G	G	A			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CCTTGCCCCCGTTGACGCTGC	0.711	35	94
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	60419868	60419868	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GGAGGAGCACGCCTCTTACCA	0.672	10	20
N6AMT1	29104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	30254531	30254531	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GCGTGCTGTCTCTAGGGTACA	0.358	23	65
COQ10B	80219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	198338608	198338608	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GAAACAAATATACCTCGGGAG	0.413	38	48
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	ATAAGCATGACGACCTATGAT	0.393	34	54
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	141543729	141543729	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CCGTTGTCCCGGGGCGAGGAG	0.637	22	89
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	38893891	38893891	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GAATGGCATTATTGTGACAAA	0.413	16	127
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	146215310	146215310	+	Silent	SNP	T	T	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CACGACTGATTTGTGCAAATT	0.313	4	36
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	86542420	86542420	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CGACTGTTCAGAACCGAGGGC	0.517	12	61
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	12952306	12952306	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GAGTTTGTTCGTCATTAGTGG	0.448	36	38
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	30702110	30702110	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GCTTCTTTTGTAAACAGAATC	0.338	39	43
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	103359284	103359284	+	Silent	SNP	T	T	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CAGAGGATCCTCCACCACTTC	0.483	83	103
SCAI	286205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	127734030	127734030	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	TTCCCATAGGCCTCTGCGCAT	0.428	57	100
DNAH8	1769	broad.mit.edu;ucsc.edu	37	6	38893890	38893890	+	Silent	SNP	T	T	A			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	AGAATGGCATTATTGTGACAA	0.408	14	122
PDE4C	5143	broad.mit.edu;ucsc.edu	37	19	18329192	18329192	+	Silent	SNP	G	G	A	rs149723522		TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	GGGCCACGTCGGCGGCATGTA	0.637	47	81
IGLV5-37	28783	broad.mit.edu;ucsc.edu	37	22	22782218	22782218	+	RNA	SNP	C	C	T			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	TGTACTACTACTCAGACTCAG	0.532	24	45
COL2A1	1280	broad.mit.edu;ucsc.edu	37	12	48370602	48370602	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CACAGGAGGGCCGGGCAGACC	0.647	5	10
PDIK1L	149420	broad.mit.edu;ucsc.edu	37	1	26448766	26448766	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	TGACATCTTTGCTCTGGGGAT	0.423	29	65
CHRNA3	1136	broad.mit.edu;ucsc.edu	37	15	78893607	78893607	+	Silent	SNP	A	A	G			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CTTTGGCTTCATTTTGTGCTT	0.408	31	104
PPP3R2	5535	broad.mit.edu;ucsc.edu	37	9	104357209	104357209	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	CCCATTGTGGACATCTGGCAA	0.607	22	48
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76938777	76938777	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-6395-01A-12D-1705-08	TCGA-DU-6395-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3189bd5c-ac35-4564-bbd1-744e17faf46d	71783be8-05e1-4cf5-9bf1-4f58ce54a273	TCTTTACACGTGGGGATCTTC	0.378	147	42
