Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
DDX24	57062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	94528925	94528925	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CTGCAACACCGCATGAATCAT	0.458	23	77
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	29663350	29663350	+	Splice_Site	SNP	G	G	C			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	TCTTCAACTAGATTACAGATC	0.328	6	72
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48703623	48703623	+	Silent	SNP	A	A	G			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	GAAGCAGCTTAGAGTTGGACA	0.642	13	32
SSTR2	6752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	71166516	71166516	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CTGAATGAGACCACGGAGACC	0.547	11	54
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6833209	6833209	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	AACATCTATCCGGAGAATGCC	0.438	16	28
OR7A5	26659	hgsc.bcm.edu;ucsc.edu	37	19	14938560	14938560	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	GAAGGACAGCCGTACTACCAT	0.443	13	30
FLG	2312	hgsc.bcm.edu;broad.mit.edu	37	1	152282972	152282972	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CCTTGTCTTCCTCCAGTGCTG	0.572	17	211
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	ATAAGCATGACGACCTATGAT	0.393	38	59
OR5AC2	81050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	97806608	97806608	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	ATCTATTAACGCACTAATGAT	0.289	24	31
RETNLB	84666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	108475916	108475916	+	Silent	SNP	G	G	T			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CTAGACTGTTGAGAACATCCT	0.498	4	19
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu	37	3	131190117	131190117	+	Silent	SNP	A	A	C			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	GAAAACCTTTACCAATACTGA	0.403	4	83
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	113352721	113352721	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CCCTTGACACCCTTCTCGCCT	0.493	18	46
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	162577517	162577517	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	TAGAATAATATTGTTCCTTTT	0.353	14	25
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	162577525	162577525	+	Missense_Mutation	SNP	T	T	A	rs61746784		TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	TATTGTTCCTTTTCCAGATAA	0.353	15	29
MCC	4163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	112439958	112439958	+	Silent	SNP	G	G	T	rs142794653	byFrequency	TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CCTCGGCCACGGAGAGGCTGC	0.572	31	117
UBLCP1	134510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	158697549	158697549	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	AGAAAACCTACTGAAAATTTC	0.333	9	85
RREB1	6239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	7229828	7229828	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CCACTGCAGGCGATCTTCAAG	0.642	47	264
GPR115	221393	hgsc.bcm.edu;broad.mit.edu	37	6	47682356	47682356	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	GTGGTTTATCATAGGCTCTCA	0.458	22	337
KIT	3815	broad.mit.edu;ucsc.edu	37	4	55573431	55573431	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	TTATCCCAAGTCTGAGAATGA	0.403	20	49
OR4M1	441670	broad.mit.edu;ucsc.edu	37	14	20248557	20248557	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	GGTCCAACTAGTCCTATTTGT	0.388	30	288
RUFY2	55680	broad.mit.edu;ucsc.edu	37	10	70141155	70141155	+	Splice_Site	SNP	T	T	C			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	ATTCTCTACATCCTGCAATTT	0.358	77	122
FRMD4B	23150	broad.mit.edu;hgsc.bcm.edu	37	3	69230517	69230518	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CTCCTGACTCTTTGAGTAAACA	0.446	11	49
C8orf47	0	broad.mit.edu;hgsc.bcm.edu	37	8	99101783	99101784	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	TGAGAATCCACAAACTGCTGCA	0.52	10	28
SS18	6760	broad.mit.edu;hgsc.bcm.edu	37	18	23632625	23632626	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	GTCTGGGACCATAGTTTCCCAT	0.426	32	125
FUBP1	8880	broad.mit.edu	37	1	78444677	78444678	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	GCACTGTTGAATAGTCTGCCAT	0.559	10	7
CIC	23152	ucsc.edu	37	19	42791721	42791721	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	CATCCGGCGGCCCATGAATGC	0.627	3	39
CIC	23152	ucsc.edu	37	19	42791790	42791790	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-6397-01A-11D-1705-08	TCGA-DU-6397-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	678aeec7-2b41-46fc-b4c9-0c9f6b2018bb	60cfef6e-ae32-4680-83e6-f969464d5805	TCCCAACCAGGACAACCGGAC	0.612	3	39
