Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CYP2C19	1557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	96612622	96612622	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GTTGTCAATGGATTTGCTTCT	0.473	46	10
OR9G1	390174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56468437	56468437	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TGGCGAGAAGGGCGGCTATAA	0.478	25	94
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	117723945	117723945	+	Silent	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CCACACAGCGCGAGGCATTCC	0.562	34	60
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	20635254	20635254	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CCTGCAGCAATTGAGGAGCTA	0.418	13	8
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	23855275	23855275	+	Silent	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GCCGCTCCACGATGGCGATGT	0.637	21	32
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	47426601	47426601	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CTGCATCTCCCAGCTCCAGCT	0.358	14	28
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	65258514	65258514	+	Silent	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TGTTGGCAGCGAGGTTCACAC	0.557	21	24
CASKIN1	57524	hgsc.bcm.edu;broad.mit.edu	37	16	2230409	2230409	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GGCCAGGTCACTGGCCCGCCG	0.716	6	6
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2499351	2499351	+	Missense_Mutation	SNP	C	C	A	rs151164394		TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GAACCCAGCACCTGTGCAGCT	0.662	13	22
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	6329143	6329143	+	Silent	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	AGTAGGCCTTCACGATGCCTG	0.657	23	5
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GGCACCACCACACTATGTCGA	0.537	27	2
SLC16A3	9123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	80195561	80195561	+	Silent	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TGTTCTTCAACGGCCTCGCGG	0.652	32	70
POLR2E	5434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1090943	1090943	+	Silent	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GCTCCTGCTGCAGAAACTGCT	0.667	14	41
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56244772	56244772	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TCGTCTAGCCGCAGCAGTATA	0.433	37	59
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	210856965	210856965	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	ACGAGTCTGTCTTCTTCAGTG	0.592	26	59
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	1843079	1843079	+	Silent	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	ACCCGGAGGCGCTGCGATGGG	0.632	32	43
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	32476671	32476671	+	Splice_Site	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TGAAAAAGACCTATTAGAGAA	0.448	23	28
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	136566631	136566631	+	Missense_Mutation	SNP	C	C	T	rs146467199	byFrequency	TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TTGATGACGGCGTGGGCTATC	0.552	18	29
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	178682596	178682596	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TCAAAAAGTCGTTGATCTGCA	0.378	24	10
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	14861759	14861759	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GGGGCTTTGTGTGGCCAGTGT	0.617	18	22
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52428569	52428569	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CGGGCTTGGCGAGACATCCTA	0.577	22	38
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	80327904	80327904	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	AAATCGTTCCATCCTGAGAAC	0.507	53	68
ADH1A	124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	100205899	100205899	+	Silent	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	AGTTGCTCTCCGGGTTTTTAC	0.418	18	33
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	118975505	118975505	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TCCTGGAATCGAAGCCTTCTA	0.343	18	21
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	155507658	155507658	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CCCAGGGTTTCGGTTTCCAGT	0.572	91	112
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	37364077	37364077	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CATGCAATTACACTGCATATC	0.373	33	44
ZSCAN31	64288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	28294587	28294587	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TTTAAGATTTCTTGCTTTGAT	0.363	24	43
PLAG1	5324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	57079207	57079207	+	Silent	SNP	G	G	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	AAGAGGGCACGCCACCTTGTA	0.458	96	74
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	120475558	120475558	+	Silent	SNP	C	C	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GTAGAAATGGCTTGAGTTTCA	0.383	21	31
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	135202372	135202372	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CAACTGAGGCCGACTTACAGA	0.368	24	30
P2RY10	27334	hgsc.bcm.edu;ucsc.edu	37	X	78216946	78216946	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TTTATGGCTTCAGAGTTTCGT	0.473	75	9
LUC7L2	51631	broad.mit.edu;ucsc.edu	37	7	139030301	139030301	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CCAAGCTGCCACCTATCTCTG	0.512	61	68
R3HDML	140902	broad.mit.edu;ucsc.edu	37	20	42979326	42979326	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	GAGTCCCCGTACAAGATGGGA	0.532	33	40
GUCA1B	2979	broad.mit.edu;ucsc.edu	37	6	42162502	42162502	+	Silent	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CCTGGAGCTCCGCCACATCTA	0.562	6	8
EDAR	10913	broad.mit.edu;ucsc.edu	37	2	109527457	109527457	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	aggacgatggcgatggccatg	0.577	15	21
MSLNL	401827	broad.mit.edu;ucsc.edu	37	16	823215	823215	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CTGAGGATGCAGCCATCCAGG	0.632	24	34
TAAR5	9038	broad.mit.edu;ucsc.edu	37	6	132910545	132910545	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CTCCACTGAGCGAATGGTGCT	0.587	27	49
KRT6B	3854	broad.mit.edu;ucsc.edu	37	12	52842747	52842747	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CTGCAGCTCCTCGTACTGCAG	0.537	36	59
TMPRSS11F	389208	broad.mit.edu;hgsc.bcm.edu	37	4	68925146	68925146	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	CAGTGCTTATGGTTTCCACTC	0.363	21	29
EGFR	1956	ucsc.edu	37	7	55233043	55233043	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7013-01A-11D-2024-08	TCGA-DU-7013-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7	e7a1b446-ae3d-4f8f-a976-fdaa7902e760	TGCCCGGCAGGAGTCATGGGA	0.567	1620	71
