Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR52N5	390075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5799221	5799221	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	AAACACTCCAATCAGGAGAGC	0.438	15	65
TRPC6	7225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	101323746	101323746	+	Silent	SNP	A	A	G			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	GTTCTCTAATAAGTTCTGCTA	0.368	50	96
GRIK4	2900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	120732708	120732708	+	Missense_Mutation	SNP	G	G	T	rs137906208	by1000genomes	TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	GTGGATGATCGTGTCAACATC	0.483	76	84
CLEC7A	64581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	10277909	10277909	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TTCATTTGAGCTGTCTATCTT	0.388	12	83
SH2B3	10019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	111885211	111885211	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CTGGTTCCACGGCCCCATCTC	0.622	23	57
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	24924397	24924397	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CAGCACACATGGACAGAGAGA	0.478	45	91
EXD1	161829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	41476577	41476577	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TGTAAAACTTGGAGCTTTATC	0.378	52	89
TANGO6	79613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	68894132	68894132	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	ACTGTCCAGTTCGTTTTGCAG	0.483	72	98
CD22	933	hgsc.bcm.edu;broad.mit.edu	37	19	35832001	35832001	+	Silent	SNP	T	T	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CTTGTAATAGTTGGTGCTCGT	0.622	4	47
MMEL1	79258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	2529663	2529663	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TAGTTCACTCGTGTGTCCTTG	0.582	35	12
TPM3	7170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	154145663	154145663	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CCGGTTTTCAATAACCTTCAT	0.433	17	38
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	165579003	165579003	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TCCTTCATAATATCTAGGTTT	0.313	27	33
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	ATAAGCATGACGACCTATGAT	0.393	43	59
USP37	57695	hgsc.bcm.edu;broad.mit.edu	37	2	219321847	219321847	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	GTGACTGACAACACTGATGAG	0.363	4	49
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	77998517	77998517	+	Silent	SNP	G	G	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TTTTTTCCCAGCCATATGGAA	0.274	15	43
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	82583261	82583261	+	Silent	SNP	G	G	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	ACACGGTTTCGGATAAGCTAC	0.428	45	49
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150500857	150500857	+	Silent	SNP	C	C	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CTCCAGCCCCCACTCAGAGTC	0.537	20	45
RNF32	140545	hgsc.bcm.edu;broad.mit.edu	37	7	156447399	156447399	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	GAAGAATTCGAGCTTCGTCCT	0.542	4	55
PSMD5	5711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	123586941	123586941	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TGACAGCCAGGTTTCCAAAAA	0.388	27	45
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	12904193	12904193	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CGAAATCCTTGTTATGTTTCA	0.383	28	50
CIC	23152	broad.mit.edu;ucsc.edu	37	19	42791815	42791815	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	AGCAAGATCCTGGGCGAGTGG	0.617	21	11
CABLES1	91768	broad.mit.edu;ucsc.edu	37	18	20837289	20837289	+	Silent	SNP	C	C	T			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TGCCCGAGCACGAAGTCATGC	0.557	9	39
DMPK	1760	broad.mit.edu;ucsc.edu	37	19	46275947	46275947	+	Silent	SNP	G	G	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	GCGCTTGCACGTGTGGCTCAA	0.632	20	3
HDX	139324	broad.mit.edu;ucsc.edu	37	X	83616611	83616611	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	AACTGAGTGCGGTCCTGTAGC	0.378	14	20
ACN9	57001	broad.mit.edu;ucsc.edu	37	7	96747045	96747045	+	Silent	SNP	C	C	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TATGCCGGGGCGGCACGTTTC	0.647	28	43
CAPNS2	84290	broad.mit.edu;ucsc.edu	37	16	55600782	55600782	+	Silent	SNP	A	A	G			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	GAAATATTGGAGGGATAGTTG	0.507	3	30
POP1	10940	broad.mit.edu;ucsc.edu	37	8	99169863	99169863	+	Silent	SNP	G	G	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	AATTACTGAAGCAACTGTCAG	0.488	7	60
GGT7	2686	broad.mit.edu;ucsc.edu	37	20	33439058	33439058	+	Silent	SNP	C	C	T			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	TGAGGCCCCGCGCAGCTCCAT	0.637	10	30
SMARCA4	6597	broad.mit.edu;ucsc.edu	37	19	11141525	11141525	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CCTCCAGTCGGCAGACACTGT	0.607	3	8
TMEM131	23505	broad.mit.edu;ucsc.edu	37	2	98377070	98377070	+	Silent	SNP	G	G	A			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CTGAGCCATCGCTGTCAACAG	0.478	4	7
MAGEE2	139599	broad.mit.edu;ucsc.edu	37	X	75004654	75004654	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7294-01A-11D-2024-08	TCGA-DU-7294-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b576b3bd-8c8b-4b42-bb6e-de38b2e326a5	f68fc265-8b53-451d-b684-8e541d074aeb	CGCCCCCAAACGTCTGGACTG	0.557	12	37
