Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RHOD	29984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	66834308	66834308	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TTTGACAACATCTTTAACCGG	0.607	50	99
SLC25A21	89874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	37198737	37198737	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TGACACATATCCCAGCAATTT	0.318	11	19
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	GTCTCTCCCAGGACAGGCACA	0.552	37	8
PIK3R5	23533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	8789796	8789796	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	GGCCTTACCTCGGTCTGATAG	0.667	7	59
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu	37	17	41926022	41926022	+	Missense_Mutation	SNP	G	G	A	rs115182680	by1000genomes	TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	AGGGACCACCGGAAGTACTGG	0.577	5	81
GALE	2582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	24124673	24124673	+	Silent	SNP	G	G	A			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	GCACCGACTCGCCCACGGCCT	0.557	24	49
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	240071460	240071460	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TGGCACAGCCATCGCTGCTTT	0.453	11	115
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	62839582	62839582	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TGTTATTGTGGAGGTCCGCTC	0.577	57	109
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	55479696	55479696	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TACGACAATGTCAGTGACCTG	0.463	43	60
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	ATAAGCATGACGACCTATGAT	0.393	31	39
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	241989284	241989284	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	AGGCTCCTGCGATGCCCATGA	0.692	21	74
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140181907	140181907	+	Silent	SNP	C	C	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TCAGCGTGTCCGACCGCGACT	0.483	42	89
PRKAR1B	5575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	751125	751125	+	Silent	SNP	G	G	C			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	CCGAGGGGCAGGCGGGCGGGG	0.647	9	73
ZNF138	7697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	64291898	64291898	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	CAAAAAGTGACACTGAGCAGA	0.368	15	96
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	149489167	149489167	+	RNA	SNP	G	G	A			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	CTTGCCCTCAGGACGGCTGCC	0.627	36	59
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	8654899	8654899	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	GATCACAGTCGGCGTGGGTGG	0.557	20	29
PHB2	11331	broad.mit.edu;ucsc.edu	37	12	7077659	7077659	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	CGGCAACACTCGTTCCTCGTA	0.567	12	38
RP11-344E13.3	0	broad.mit.edu;ucsc.edu	37	17	20805993	20805993	+	RNA	SNP	A	A	G			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	CGAACCCGTGAGAGCAGCGGC	0.632	15	0
GPR162	27239	broad.mit.edu;ucsc.edu	37	12	6933476	6933476	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	ACTGCATGCCGTCATGGGCAT	0.612	30	121
DNAH17	8632	broad.mit.edu;ucsc.edu	37	17	76510921	76510921	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	AGCTCGCTCACGGCACGCAGG	0.612	28	42
VPS72	6944	broad.mit.edu;ucsc.edu	37	1	151158055	151158055	+	Silent	SNP	C	C	T			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	AGCTACCAGCCGGGGTGTTGA	0.498	17	205
RERE	473	broad.mit.edu;hgsc.bcm.edu	37	1	8716199	8716200	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	ACTGTGATCACTCTCAGCATAA	0.465	117	323
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu	37	1	201047179	201047181	+	In_Frame_Del	DEL	TCT	TCT	-	rs9333651		TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	AGCCCGTACATCTTCATCAGCAT	0.571	37	70
OBSL1	23363	broad.mit.edu;hgsc.bcm.edu	37	2	220428315	220428316	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	GCACGAACACATGTTCTCGGGG	0.594	67	98
CCDC6	8030	broad.mit.edu;hgsc.bcm.edu	37	10	61612347	61612349	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TAGTGAGGAATTCTTCTTCTTTC	0.36	31	65
PCDH9	5101	broad.mit.edu;hgsc.bcm.edu	37	13	67801664	67801665	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TATTTAAAGCAAAGAGTCTTTT	0.465	37	61
ZC3H7A	29066	broad.mit.edu;hgsc.bcm.edu	37	16	11864798	11864799	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	GGCATGCTAGGAGAGACACTGG	0.485	29	80
NF1	4763	broad.mit.edu;hgsc.bcm.edu	37	17	29576134	29576134	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	ACTGTTTATACCAGGTATGCT	0.403	22	92
NF1	4763	broad.mit.edu	37	17	29541467	29541468	+	Splice_Site	DEL	AG	AG	-			TCGA-DU-7299-01A-21D-2024-08	TCGA-DU-7299-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	23a9a0b4-0a13-4e5b-941b-8174a1c8f301	ee7cefc3-bfbf-4b30-9509-c7b6084b33d4	TTTTGTTTTTAGAGTCTTACAT	0.292	11	21
