Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	15559198	15559198	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TGTTCCCTGTCGGTCATGTCC	0.443	21	36
GALNT18	374378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	11642953	11642953	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CAGCCGCTCAATAATCTTCAG	0.622	62	141
GIF	2694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	59611461	59611461	+	Silent	SNP	T	T	C			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GGTAGGCTGATGAAGTCACCG	0.522	15	64
BTG4	54766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	111365994	111365994	+	Missense_Mutation	SNP	G	G	A	rs140812937		TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TTCTTTTTGCGGGGGATTTGT	0.448	32	68
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	41333261	41333261	+	Silent	SNP	G	G	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GGAGTAAAGGGACAGAGTGGC	0.373	11	39
MPHOSPH8	54737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	20221185	20221185	+	Silent	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	AGGAGGATACCGATGTCAGAG	0.498	13	48
LATS2	26524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	21562426	21562426	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CGGGAAGGCGCCTGCGCCGCC	0.766	8	9
CCDC113	29070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	58287907	58287907	+	Silent	SNP	A	A	G			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TGCAGTTTCGAGGCAGGCGTA	0.498	50	99
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	rs28934574		TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TCTGTGCGCCGGTCTCTCCCA	0.557	22	46
GFAP	2670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42991175	42991175	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ACGGGCCAGGGTGGCTTCATC	0.622	76	118
ELANE	1991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	852925	852925	+	Silent	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CGCGGCCCCACGCGTGGCCCT	0.721	6	29
LRP3	4037	hgsc.bcm.edu;broad.mit.edu	37	19	33696671	33696671	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	AGCAACCACCGGCCCGTGAGC	0.706	9	1
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55105741	55105741	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CTGATCTGTCTCAGTGAGATT	0.587	65	77
DNAJC28	54943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	34860571	34860571	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CCACAGATTCATCCAGTTTAA	0.299	8	26
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	50689416	50689416	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TCCCAGAGCAGCCGGGTGGCC	0.667	31	57
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	26686908	26686908	+	Missense_Mutation	SNP	C	C	T	rs143889717		TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GCAGCCTGCGCGGGGGATGTC	0.667	76	172
TMEM131	23505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	98504555	98504555	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	AATCGTATGGGCCTGCAATTC	0.338	10	30
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152319418	152319418	+	Silent	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TGGACAGTGACATTGTCATTC	0.393	21	42
GALNT13	114805	hgsc.bcm.edu;ucsc.edu	37	2	155306962	155306962	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CCAATGTCTCGATGAACCTTC	0.438	38	76
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	166170182	166170182	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CCCCAACTATGGCTACACGAG	0.433	35	77
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ATAAGCATGACGACCTATGAT	0.393	22	83
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	74012998	74012998	+	Silent	SNP	T	T	C			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	AATGACCCTCTTGAGCAGCTT	0.398	58	96
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	168440828	168440828	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CTGGTGCACGCGGATTCCTCC	0.572	16	51
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	138603027	138603027	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CACAGAGTCTCGGCACCATCC	0.517	13	115
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	110487479	110487479	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TCATATACATCGACATTCTAT	0.338	8	14
CDC14B	8555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	99296274	99296274	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TTTGACAATGGCATCAGTAGG	0.423	11	8
ARSF	416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	3021883	3021883	+	Missense_Mutation	SNP	C	C	T	rs141853880	byFrequency	TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ACCAGCTGGACGGTTGATTAA	0.478	41	87
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	47918328	47918328	+	Silent	SNP	A	A	C			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GTATGATAAGAGGTGATTTCT	0.413	33	49
TFE3	7030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	48887870	48887870	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GGTCCCCCAGGTGGTCGCTGG	0.672	22	166
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	107978402	107978402	+	Silent	SNP	G	G	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	AAAGCATCTCGTCTTCCCCGT	0.652	50	104
HS6ST2	90161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	132091353	132091353	+	Splice_Site	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ATGTTCCCGACGCTGGGGGAA	0.627	11	57
ADH1C	126	broad.mit.edu;ucsc.edu	37	4	100263953	100263953	+	RNA	SNP	A	A	G	rs78836241		TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GGATCATACCATGGTGTCAAG	0.413	89	199
GPR50	9248	broad.mit.edu;ucsc.edu	37	X	150349612	150349612	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CCACTGCTGACTATCCCAAGC	0.617	80	196
AKR1CL1	340811	broad.mit.edu;ucsc.edu	37	10	5203897	5203897	+	Silent	SNP	C	C	T			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TTTCTAGGGCCGGGTGAACCA	0.388	13	23
MIR520H	574493	broad.mit.edu;ucsc.edu	37	19	54245794	54245794	+	RNA	SNP	A	A	G			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TAGAGGAAGCACTTTCTGTTT	0.388	21	40
TBCK	93627	broad.mit.edu;ucsc.edu	37	4	107229997	107229997	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ATTTGAAAGCGCCCTAAAATT	0.413	25	72
RPS6KA3	6197	broad.mit.edu;ucsc.edu	37	X	20205954	20205954	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ACCATTAACACACCAAAAGAC	0.388	77	218
PKD1L1	168507	broad.mit.edu;ucsc.edu	37	7	47840379	47840379	+	Silent	SNP	G	G	A	rs138774842		TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ACAGCAGCCCGGGGAAGGCGT	0.567	46	125
RLF	6018	broad.mit.edu;hgsc.bcm.edu	37	1	40701977	40701978	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GCATAAGGAGAAAAGAGACAAA	0.356	29	31
ALMS1	7840	broad.mit.edu;hgsc.bcm.edu	37	2	73746974	73746976	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TCACTCAGATAACAACAGAAAGT	0.384	12	41
EPC2	26122	broad.mit.edu;hgsc.bcm.edu	37	2	149539217	149539218	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TACCAGTAACAGGGGGTATCAC	0.376	16	32
SKIV2L2	23517	broad.mit.edu;hgsc.bcm.edu	37	5	54706365	54706367	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TGATGAGCTCCTTCTAACTGAGA	0.35	31	103
IPO11	51194	broad.mit.edu;hgsc.bcm.edu	37	5	61779947	61779949	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CCTATTAACTGAAGAAGAACTGA	0.33	18	42
PIK3R1	5295	broad.mit.edu;hgsc.bcm.edu	37	5	67589550	67589552	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CAAGTTGTCAAAGAAGATAATAT	0.266	10	26
PIK3R1	5295	broad.mit.edu;hgsc.bcm.edu	37	5	67589623	67589624	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	AAAGTCGAGAATATGATAGATT	0.287	17	36
NOTCH1	4851	broad.mit.edu;hgsc.bcm.edu	37	9	139413070	139413072	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	CACTCGCAGTAGAAGGAGGCCAC	0.655	12	43
TTBK2	146057	broad.mit.edu;hgsc.bcm.edu	37	15	43045062	43045066	+	Frame_Shift_Del	DEL	ACTTA	ACTTA	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GCTGCCCTCTACTTAACTTCTCATC	0.4	27	85
IREB2	3658	broad.mit.edu;hgsc.bcm.edu	37	15	78764190	78764192	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	AAGAAAAAGACCTCCTCTTCCCA	0.399	20	54
ACADVL	37	broad.mit.edu;hgsc.bcm.edu	37	17	7125570	7125572	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GGAGCCGTGAAGGAGAAGATCAC	0.552	25	74
TSHZ1	10194	broad.mit.edu;hgsc.bcm.edu	37	18	72997649	72997651	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	TCTCGAGAAGAGAAGGAGGATCC	0.586	14	31
EID2B	126272	broad.mit.edu;hgsc.bcm.edu	37	19	40023078	40023081	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GCAGCCTTCCACAAACAGCCTGCG	0.574	18	44
TRIM28	10155	broad.mit.edu;hgsc.bcm.edu	37	19	59061018	59061021	+	Splice_Site	DEL	GTGA	GTGA	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	ATGTACCAGGGTGAGTGTGAGGCT	0.574	87	140
FUBP1	8880	broad.mit.edu	37	1	78433848	78433851	+	Splice_Site	DEL	CAGT	CAGT	-			TCGA-DU-7300-01A-21D-2086-08	TCGA-DU-7300-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	41bb7bd2-c24e-41ae-881d-25b44ae287ad	2de73131-9a0c-46fc-aa61-6d35f76f75d2	GGAATACTTACAGTCATTTTGAGG	0.319	8	14
