Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ADARB2	105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	1405926	1405926	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GTTCTTGGGCGCCACCGACCA	0.692	45	36
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55371099	55371099	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	AATATACATGGGCCAAAGAAT	0.438	15	85
LPCAT3	10162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7092611	7092611	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	AAATAAGCAATTGAGAGGCCT	0.418	132	202
ANAPC7	51434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	110824234	110824234	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CTTCCCAATAGGTCCACGTTA	0.353	143	212
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	33292355	33292355	+	Missense_Mutation	SNP	T	T	G	rs74712664		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GACTCCAGTATTGCAACAGAT	0.433	31	57
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	48786433	48786433	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TCTTGAGTACCCTTTACCACA	0.323	26	91
PAFAH1B1	5048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	2576020	2576020	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CTCAAGGGATAAAACTATAAA	0.433	25	49
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GATGGGCCTCCGGTTCATGCC	0.572	53	83
DNAJC7	7266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40133943	40133943	+	Silent	SNP	G	G	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TGGGATCAGAGAGGATAGTAA	0.502	33	104
CETN1	1068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	580857	580857	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GACGAAGCTGATCGGGATGGG	0.542	18	94
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	34414311	34414311	+	Silent	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CAGTAGTATACGTTCCAGGTA	0.338	15	12
DAPK3	1613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	3964267	3964267	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TGCCGAAGATGTTCTTGAACT	0.627	17	53
OR2Z1	284383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	8841995	8841995	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CTGTCCACCTCAGGGGTGCTG	0.577	26	173
PHLDB3	653583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	43999703	43999703	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CGGCTCTCGGCTGCCATCTGC	0.642	12	14
CRX	1406	hgsc.bcm.edu;broad.mit.edu	37	19	48342788	48342788	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TCCCCAACCACGGCAGTGGCC	0.667	10	122
GRWD1	83743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	48953672	48953672	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GGAGGAGCCCCAGGCCCTGGC	0.647	33	105
VWA1	64856	hgsc.bcm.edu;broad.mit.edu	37	1	1374627	1374627	+	Silent	SNP	G	G	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GGAACGCCACGGACTGGATCT	0.697	13	18
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	12071583	12071583	+	Silent	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	ACAGTGAGCTCAACATGTTCA	0.537	58	102
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	90401127	90401127	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GGAAGATCACCTTTTTGATAC	0.478	63	77
LPPR4	9890	hgsc.bcm.edu;broad.mit.edu	37	1	99753520	99753520	+	Splice_Site	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TTCATTCTTAGTTGCCTATAT	0.433	6	124
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	147381232	147381232	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GGGTGAAAAAGAAGAGCCGCA	0.582	8	6
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	183201918	183201918	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CCAGAACCGAGTTCGGGATAC	0.522	68	130
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	201618190	201618190	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GGGCCGTGAAGCTCCGCTGAT	0.647	9	22
C1orf101	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	244773582	244773582	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	AAGTCAATGATTGAACTTAAC	0.388	48	67
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248028031	248028031	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GCAGAGGCAGCGCTTCAGATT	0.592	19	42
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	50701276	50701276	+	Silent	SNP	G	G	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CGAAGGAGGCGCCGCAGGTCT	0.597	15	40
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	136872470	136872470	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	AGACTCAGACTCAGTGGAAAC	0.403	10	9
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179495026	179495026	+	Silent	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CCACCCCACCCGTCTGGTCCA	0.398	42	56
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	ATAAGCATGACGACCTATGAT	0.393	38	77
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	51663382	51663382	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TTGGAGCCTGTTACCAAAGCA	0.463	5	8
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	111705808	111705808	+	Silent	SNP	A	A	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TTCATGCTGCAATTGCACGAC	0.383	40	78
ZDHHC23	254887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	113677375	113677375	+	Silent	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GCGGGCTCATCGTGGACACAG	0.602	21	39
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	121409831	121409831	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	ATTGAAAAGGCGGTTTCAGAA	0.423	33	46
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	90035215	90035215	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GACAGTGTTGGATGCAATTTA	0.378	37	58
SLC9B2	133308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	103970144	103970144	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CCCATGGACAGTCTTACACAA	0.453	19	31
RNF14	9604	hgsc.bcm.edu;broad.mit.edu	37	5	141353304	141353304	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GATATTTGTGAGCGGTTAGTT	0.308	4	79
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	54806708	54806708	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CCATTGCTTAATTACAACACT	0.368	7	75
ANKRD6	22881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	90312803	90312803	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GAGATCATCGCGGCGCTCATC	0.612	10	18
AIM1	202	hgsc.bcm.edu;broad.mit.edu	37	6	107009224	107009224	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TAGAAGCGAATTTATTTCAGA	0.418	6	87
TRDN	10345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	123687319	123687319	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TCTTTGGCTCGTTCAGTTTCT	0.303	8	29
ASB4	51666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	95165776	95165776	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TTCTTGTCCTAAAGCAATTGA	0.423	27	77
STAG3	10734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99811425	99811425	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GAGCTGGATATTGAGGTGAGT	0.517	54	196
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	61654055	61654055	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TGAAGGTCTTGAAGGCCTCGG	0.478	15	15
CCNE2	9134	hgsc.bcm.edu;broad.mit.edu	37	8	95906307	95906307	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GGGGATTCCGTCTGGCTGGGC	0.453	10	198
TBC1D31	93594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	124117596	124117596	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GTGATCTTAAGATGAAAGTAA	0.343	10	33
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	124359562	124359562	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TTTCTCACTAGTGGTATAGAT	0.423	30	112
KIAA1432	57589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	5769212	5769212	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	ATCATCCCAGCCTCTTCTATC	0.438	29	240
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	20866927	20866927	+	Splice_Site	SNP	G	G	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	ACCCTATCTAGGACCCAATTG	0.363	17	56
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	1404769	1404769	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	AACCTTCAGCAAGTGTTTCTT	0.473	70	217
CXorf58	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	23956785	23956785	+	Silent	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	AAAAGTTTATTTGGCTAAAGA	0.338	59	20
ACTN3	89	broad.mit.edu;ucsc.edu	37	11	66328794	66328794	+	RNA	SNP	G	G	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	TGCGGCCCAGGCCAATGCCAT	0.652	10	19
TLDC1	57707	broad.mit.edu;ucsc.edu	37	16	84516258	84516258	+	Silent	SNP	C	C	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CGTTGTAGCCCGTGTGTGTGT	0.552	23	52
IL1R1	3554	broad.mit.edu;ucsc.edu	37	2	102785082	102785082	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	ACAAGGCCTGTGATTGTGAGC	0.398	14	156
ZNF462	58499	broad.mit.edu;hgsc.bcm.edu	37	9	109690957	109690957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	CACACGGCACTTTGGAGAAAC	0.532	46	68
ZNF492	57615	broad.mit.edu;hgsc.bcm.edu	37	19	22847842	22847842	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	GTGGCAAAGCTTTTAACCAGT	0.388	107	35
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76814303	76814306	+	Frame_Shift_Del	DEL	ATAA	ATAA	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	AGTAGAAATGATAAATAATCGTCC	0.289	32	9
