Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	88418311	88418311	+	Silent	SNP	C	C	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	CGGCCATCGCCCTGGACCGCT	0.612	8	81
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	9459665	9459665	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GGACTCTGTGCTCTTATTGAT	0.308	5	107
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	24884570	24884570	+	Silent	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	CCCAGTCAGGGGGTGACAGCC	0.622	13	95
NUTM1	256646	hgsc.bcm.edu;broad.mit.edu	37	15	34640382	34640382	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	AGGGGATGGGGGCCCTTGCCT	0.562	7	145
SGK494	124923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	26939672	26939672	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	CAGCTGTCCCCCAAGCTGTGT	0.488	13	69
GIPC3	126326	hgsc.bcm.edu;broad.mit.edu	37	19	3589459	3589459	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GGCCAGAGAAGTCGGTCCAGC	0.597	6	93
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	15073150	15073150	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GCTGTACTGCGTCTTGAACTG	0.532	22	107
CYP4F12	66002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	15791263	15791263	+	Silent	SNP	C	C	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TGCTGACGCCCGCCTTCCATT	0.537	7	41
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	36046172	36046172	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GGCTACTCCGATGTCTGCCTT	0.587	11	83
RRAS	6237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	50140129	50140129	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GTGGCCAGCACGCATGTACTG	0.667	19	176
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186055385	186055385	+	Silent	SNP	A	A	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TAGTTCCTCCAAGTGTCATTG	0.368	9	63
C4BPA	722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	207297690	207297690	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TGTTTGGAGACCAAGCCCTCC	0.428	13	53
RTN4R	65078	hgsc.bcm.edu;broad.mit.edu	37	22	20229976	20229976	+	Missense_Mutation	SNP	C	C	T	rs139685891		TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TGTCATGAGGCGGCCAAGGTC	0.642	7	83
SNRNP200	23020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	96970469	96970469	+	Silent	SNP	C	C	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	CCTGCATCTGCGGTTTGGTCC	0.527	8	130
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	242432832	242432832	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TACTTCTTCCGGGCTGAGAGC	0.527	7	63
C3orf30	0	hgsc.bcm.edu;broad.mit.edu	37	3	118865808	118865808	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TTCCGTACAGATTGACCGCAG	0.502	5	73
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	9629469	9629469	+	Missense_Mutation	SNP	C	C	T	rs145804099		TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GACAGCAACGCGCTGATGGGT	0.498	9	57
FOXQ1	94234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	1313285	1313285	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GCCATATACGCGGCGGCCCAA	0.746	10	54
MRS2	57380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	24412567	24412567	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GGGTCAACTCGTTACATACCC	0.388	8	113
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	110778136	110778136	+	Silent	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GATGAGGGGTGACTCCCATGA	0.473	6	45
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	55233043	55233043	+	Missense_Mutation	SNP	G	G	T	rs139236063		TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TGCCCGGCAGGAGTCATGGGA	0.567	200	162
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	100187922	100187922	+	Silent	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GACTCAGTCCGCGCCTCCAAG	0.602	10	45
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128490958	128490958	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GAAAGGCCTGCACCAGATGGG	0.617	21	231
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	2027640	2027640	+	Splice_Site	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TCTCTCCGCAGCCGTTCATTT	0.512	51	397
PHKA2	5256	hgsc.bcm.edu;ucsc.edu	37	X	18956823	18956823	+	Silent	SNP	G	G	A	rs35010660	byFrequency	TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	CAATGTTTTCGAAGAGCTTGA	0.383	17	86
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	101912054	101912054	+	Silent	SNP	G	G	A			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TTAGATTTCCGAAAGAGGCAG	0.512	20	154
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	118774683	118774683	+	Silent	SNP	C	C	T	rs143382025		TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	GATACTGCCGCGCCCTCATCA	0.547	23	181
RFX4	5992	broad.mit.edu;ucsc.edu	37	12	107090062	107090062	+	Splice_Site	SNP	T	T	G			TCGA-DU-8162-01A-21D-2253-08	TCGA-DU-8162-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	337b4f73-2891-4f94-a24e-a6022bc871da	a92ca991-440e-4646-826f-2db2b4734fb2	TCAATACAGGTTCAAAGTTTC	0.552	14	67
