Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR52I2	143502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	4608347	4608347	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GTGGACATTGTTATGGCCTCC	0.483	86	225
OR52E8	390079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5878650	5878650	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	ATTTCTTTGGTATTGAACCAG	0.473	66	108
ZDHHC13	54503	hgsc.bcm.edu;ucsc.edu	37	11	19184936	19184936	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGCAACTGATCCAGGCTTCAC	0.348	3	14
ANO1	55107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	69950226	69950226	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AAGAGACTCTCCTATCCCTTC	0.542	5	6
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	70319315	70319315	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	ACATCTGAGAGAGCGGGAGAA	0.602	39	77
MMP8	4317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	102587093	102587093	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TGTCAAACTGGGGTCACAGGG	0.363	56	89
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu	37	12	43822162	43822162	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	ATAGCTTGGCTGCACAGGGGA	0.468	4	82
OR9K2	441639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	55524375	55524375	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AGTTGTGAGTGTGCTGTATGG	0.438	30	135
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	85521757	85521757	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AAGGAAAAAGAGAAAATATTG	0.353	11	90
ATP6V0A2	23545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	124228804	124228804	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TGGAGACTTCGGACATGGCTT	0.373	28	98
ERO1L	30001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	53138414	53138414	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GCCTTCTGTGTTTCCTCACTT	0.284	23	11
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	51773679	51773679	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GTTAATTTTATCAACAAAGTT	0.378	6	43
ZNF200	7752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	3282875	3282875	+	Silent	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TCTCTTGTTCCTTTTGGACTC	0.478	19	42
USP31	57478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	23085199	23085199	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TTCTTACAGTACGCTGCCAAA	0.542	6	29
SBK1	388228	hgsc.bcm.edu;broad.mit.edu	37	16	28331420	28331420	+	Silent	SNP	G	G	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AGGACACGGTGAAGCGCTGTG	0.716	3	9
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GCACAAACACGCACCTCAAAG	0.542	5	16
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578458	7578458	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GCCATGGCGCGGACGCGGGTG	0.622	42	90
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	9546373	9546373	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GTTTGGGATTATAATGAGGGT	0.433	10	42
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	8113636	8113636	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GCAGACAGCCTCCAAGCTGCG	0.418	41	151
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	28935112	28935112	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CACCAGCATGGGTGCTGGGAG	0.602	34	86
B3GNT3	10331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17922692	17922692	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGACATCTTCCCCATTGATGA	0.622	19	172
ATP4A	495	hgsc.bcm.edu;broad.mit.edu	37	19	36046429	36046429	+	Silent	SNP	G	G	C	rs150964145	byFrequency	TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GCAGGGCCTCGACCAGTTCCG	0.657	4	70
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	43519344	43519344	+	Silent	SNP	A	A	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CATAGAGCCCATTATGCTTTG	0.463	41	118
LILRA4	23547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54849804	54849804	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CTCCAGTGTTTTTAATATGTG	0.522	52	131
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	38227727	38227727	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGGACGGTCGTGTTCATCCAC	0.627	37	107
SRSF11	9295	hgsc.bcm.edu;broad.mit.edu	37	1	70712575	70712575	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GCCAGACGTTCTAGAAGTGCA	0.348	9	115
TDRD10	126668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	154516509	154516509	+	Missense_Mutation	SNP	G	G	A	rs143192137	byFrequency	TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CATCCATAGCGTCCGTGGGGA	0.612	54	148
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	183938503	183938503	+	Silent	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AGGCCTCCTTCCTGAGGTCAA	0.537	50	155
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	245862231	245862231	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TCTGGAACACCGCCAGCAGAG	0.567	21	57
OR11L1	391189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248004441	248004441	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GATCATGGTCCCGTAGTAGAG	0.498	34	98
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	8737747	8737747	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AACGACTCCAGCAGAAAATGG	0.478	26	103
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	50224091	50224091	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TCAAAACCCATATTAAGAATG	0.498	6	61
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	17473039	17473039	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TGGCCCCTCCGCAGGATAAAC	0.493	68	120
C2orf40	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	106690448	106690448	+	Silent	SNP	C	C	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGACTCGGCCCGAGGTGCAGC	0.577	36	103
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	167288988	167288988	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TGTGCCACTGCTTTTTTCCTT	0.388	52	159
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	170060647	170060647	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TTTGTTAGCTCGGTAAATTCT	0.443	119	211
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	170115593	170115593	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	ACTACTGTGCGTCTCGTTTTA	0.398	35	157
MARS2	92935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	198570143	198570143	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CTGCGAACGTCCGTCCTCCGC	0.682	8	59
DCLK3	85443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	36779214	36779214	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TCATCTCTGAGAGTCATCCTT	0.582	71	91
GNL3	26354	hgsc.bcm.edu;broad.mit.edu	37	3	52727062	52727062	+	Splice_Site	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	ATGCTCGACAGGTAAAAGGAC	0.463	3	40
SLC7A14	57709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	170219060	170219060	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AATTCCCCAACAGTGACATAG	0.527	7	49
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178917478	178917478	+	Splice_Site	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TTTATTAAAGGTTTTGCTATC	0.338	19	44
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	20597371	20597371	+	Silent	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TCGATTTTGACGACTGCCAAG	0.468	91	105
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	155254316	155254316	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GATGGAGTACCGGATGAGTCC	0.647	13	38
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	186380589	186380589	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TTTGGTCGAGGAAGGACAGTG	0.308	30	120
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu	37	5	38464022	38464022	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TGTCCACCGATTACCACATTT	0.517	3	64
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140214298	140214298	+	Silent	SNP	G	G	T	rs61730625		TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AGGTGATCGTGGAAAGGCCGC	0.557	215	403
NR3C1	2908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	142779650	142779650	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGGTTTAGTGTCCGGTAAAAT	0.413	8	118
SH3RF2	153769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	145393444	145393444	+	Silent	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGTCCAGGAGGAAGGTGCCTG	0.577	19	99
TIGD6	81789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	149375645	149375645	+	Silent	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TTTTGGCATGGATTTCTTGAA	0.453	117	154
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	150943010	150943010	+	Silent	SNP	A	A	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TGCCCACGGGAGCATCCTCCT	0.542	10	113
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128494111	128494111	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CCGCACGGAGCGCACGGAGAT	0.657	22	45
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	77617899	77617899	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CTCGTCCTCCTCGGCGACTGT	0.428	11	24
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	99019780	99019780	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CCTTTGCCTGTCAGTGTCCTG	0.557	38	82
SPATA31C1	441452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	90534221	90534221	+	RNA	SNP	A	A	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AACAGGGCGGAGGGGGAGGCC	0.572	47	142
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	12938644	12938644	+	Silent	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GTATTTTCTTCATTGGGCCAA	0.378	11	98
CXorf23	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	19955647	19955647	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AATTCTGATCATCCCTAATAA	0.259	17	66
DGAT2L6	347516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	69421805	69421805	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AGGCAATGCCGTGGTTATTGT	0.512	15	107
SYTL4	94121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	99931048	99931048	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TTCTGCTTGGCCATTGAGGAA	0.552	6	22
HS6ST2	90161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	131762858	131762858	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GACAGAGAGGTTGTAGCAGCC	0.522	35	158
POM121L12	285877	broad.mit.edu;ucsc.edu	37	7	53103578	53103578	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGGGCGCCCGGTGCCCAGCAC	0.711	13	54
HNF1B	6928	broad.mit.edu;ucsc.edu	37	17	36093613	36093613	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CCGATCGTAGGCCTGGTACAA	0.582	22	129
FAM47C	442444	broad.mit.edu;ucsc.edu	37	X	37027101	37027101	+	Silent	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CCAAGACTCCGGTGTCCAGTC	0.652	25	69
SOGA3	387104	broad.mit.edu;ucsc.edu	37	6	127797356	127797356	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CCAGTTCGACGATTTTCCTGC	0.607	16	182
CALCR	799	broad.mit.edu;ucsc.edu	37	7	93065307	93065307	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	ATATATCTTCCCAAGCATCTT	0.453	9	53
BAIAP2L1	55971	broad.mit.edu;ucsc.edu	37	7	97922907	97922907	+	Splice_Site	SNP	C	C	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GGGTTTTCTCCGCTGCAGGGG	0.527	25	100
ITGA2	3673	broad.mit.edu;ucsc.edu	37	5	52344295	52344295	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CAGCTTCTCACCTGCAACTCA	0.478	45	43
FAM83B	222584	broad.mit.edu;ucsc.edu	37	6	54806263	54806263	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	TAGAAGAAAGCATTCTTCCTC	0.378	15	31
ZNF536	9745	broad.mit.edu;ucsc.edu	37	19	31040286	31040286	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	GCCGGAGCGGGGGCCCCAGAG	0.607	6	19
COL22A1	169044	broad.mit.edu;ucsc.edu	37	8	139793188	139793188	+	Silent	SNP	G	G	A			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	CTTTGCTGCCGTCTCTCCCAG	0.527	24	43
SCN1A	6323	broad.mit.edu;ucsc.edu	37	2	166901577	166901577	+	Silent	SNP	T	T	C			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AGTACCTCTTTTCATATGTCA	0.428	27	57
SPATA31E1	286234	broad.mit.edu;hgsc.bcm.edu	37	9	90500087	90500087	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-8165-01A-11D-2253-08	TCGA-DU-8165-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3470090e-ffbe-4874-ae9f-9b8b85494ed9	ac772409-6c5c-4b63-af6b-c77a4af6c6eb	AGAGCCCTTGCTTCCCCTAAA	0.617	54	231
