Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	18276464	18276464	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	CATGCTGGGGACAGCGCTGGT	0.557	7	91
ARHGAP19-SLIT1	100533184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	98924609	98924609	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	CGCAAAGTCATTCTTATGGAT	0.622	102	119
OR56A1	120796	hgsc.bcm.edu;broad.mit.edu	37	11	6048480	6048480	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	AATGAAGACACTAGCTTTGGC	0.493	8	131
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	128840324	128840324	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	CTGCACTCTCCGGATGGTAGG	0.552	31	75
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu	37	15	99456347	99456347	+	Missense_Mutation	SNP	A	A	G	rs45481994		TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GTGGACGTGGACCTCCCGCCC	0.537	4	50
SLC9A5	6553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	67304913	67304913	+	Silent	SNP	C	C	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	CCCTCTCCACCTACCTTCTGA	0.657	17	54
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GCACAAACACGCACCTCAAAG	0.542	19	3
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu	37	17	15943763	15943763	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	ACCTGACGTAGTAACTGCTGG	0.358	4	61
BCL2L15	440603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	114424577	114424577	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GCACACCAGGTCTTGCTGAGA	0.468	7	55
RNPEP	6051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	201972432	201972432	+	Silent	SNP	G	G	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	TCTCCCCTGGGGACTCACTCA	0.562	27	79
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	215987173	215987173	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	AGAATTCAGAACAAACGGGAT	0.433	8	65
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu	37	1	231403559	231403559	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GCTTCAGAACCGGCCATCCAT	0.458	4	60
TTLL9	164395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	30486368	30486368	+	Splice_Site	SNP	A	A	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GAAGTGAAGGAGTAAGACCCT	0.562	25	44
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	26707829	26707829	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	AGTGGAGTTCACCTGCGACCC	0.562	93	213
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	ATAAGCATGACGACCTATGAT	0.393	50	77
SPP2	6694	hgsc.bcm.edu;broad.mit.edu	37	2	234978646	234978646	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	AATAAATACTGACTTTGAGTA	0.443	4	67
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	241683359	241683359	+	Splice_Site	SNP	C	C	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GGGCGCTAACCTGAGCACGTC	0.592	14	112
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	30138295	30138295	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	ATGAAGACTTTTGTGAGTCCT	0.458	9	82
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	74472143	74472143	+	Silent	SNP	G	G	A			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GAGACGTAACGCTTACATTTT	0.294	8	56
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	70886066	70886066	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	CTGGTGGGACGCCGGAGACCC	0.597	11	40
SEMA4D	10507	hgsc.bcm.edu;broad.mit.edu	37	9	91994102	91994102	+	Silent	SNP	C	C	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	TGCCGGTGGGCGCAGGCTTGG	0.617	5	67
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76940087	76940087	+	Splice_Site	SNP	T	T	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GCACACCACCTGAAATGTTTT	0.333	48	117
CXorf48	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	134303695	134303695	+	Silent	SNP	G	G	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	TTGTCAACTGGGTGTCACCTA	0.433	21	39
MCF2	4168	hgsc.bcm.edu;broad.mit.edu	37	X	138689854	138689854	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GGATACTTCTTTAAAACATCC	0.373	5	64
GPR180	160897	broad.mit.edu;ucsc.edu	37	13	95275437	95275437	+	Silent	SNP	G	G	C			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	ACTTAGCAGGGATCCTCCTAA	0.388	21	186
MYO15A	51168	broad.mit.edu;ucsc.edu	37	17	18064731	18064731	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	CCTCCAAGACGTGAGCCGGAC	0.632	13	159
KRT16P2	400578	broad.mit.edu;ucsc.edu	37	17	16734855	16734855	+	RNA	SNP	C	C	T	rs688852	by1000genomes	TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	CACAGTCTGCCGCAGGGCCAG	0.632	7	52
PAX4	5078	broad.mit.edu;ucsc.edu	37	7	127251252	127251252	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GGCTGTGGGGGCAAGTGGCCT	0.572	3	4
RANBP9	10048	broad.mit.edu;ucsc.edu	37	6	13711709	13711709	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	ctgctgctgcggcggcggcgg	0.761	2	8
ZNF41	7592	broad.mit.edu;ucsc.edu	37	X	47315320	47315320	+	Splice_Site	SNP	C	C	A			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	GCTCACTCACCTGAACAGCTC	0.522	8	85
ZNF567	163081	broad.mit.edu;ucsc.edu	37	19	37210750	37210750	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8166-01A-11D-2253-08	TCGA-DU-8166-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae60b340-7cc9-4ebd-85a7-dc2ec942782c	c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a	AAGTCCTTCCGCCAGAAGACA	0.443	6	84
