Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PTER	9317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	16528411	16528411	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TATCAAGTGTGGCATTATTGG	0.448	19	128
SVIL	6840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	29811448	29811448	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CAGAGCTTCTCCTGTGGCTGT	0.557	11	88
TTC12	54970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	113233185	113233185	+	Silent	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AGGAGGCCTTGCGAGCAGGAG	0.423	16	115
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	109644646	109644646	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TGCCAGAGCCCGTTTTTAGCA	0.527	11	65
P2RX2	22953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	133196268	133196268	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AGCCCAGGGGGGCAGCGTGTT	0.756	6	29
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	33017399	33017399	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	ATGCTGCCACCGAAGTGAAGA	0.408	35	115
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	103287990	103287990	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AAGAGCTCTAGAAAACACTGC	0.353	10	122
DAD1	1603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	23058038	23058038	+	Missense_Mutation	SNP	A	A	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GAACCGCGAAATGACAGACAC	0.572	32	76
PRKCH	5583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	62014584	62014584	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CCAAATAGAACCGCCTTTCAG	0.522	51	165
ASB2	51676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	94404157	94404157	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GATGGGCCCCGCCCAGCGGCT	0.597	6	28
FBN1	2200	hgsc.bcm.edu;broad.mit.edu	37	15	48760623	48760623	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	ACAGCCAACTCGAGTTGGGTT	0.438	5	105
NOX5	79400	hgsc.bcm.edu;broad.mit.edu	37	15	69348973	69348973	+	Silent	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CCCCAGCTCTGGCCAAGGTGC	0.537	5	77
PRSS33	260429	hgsc.bcm.edu;ucsc.edu	37	16	2835019	2835019	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GGCGTCCTTGTGGCCCTGGGG	0.701	4	13
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CAGCGCCTCACAACCTCCGTC	0.662	50	58
ALOX12B	242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7976156	7976156	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AAGGCACTTGTTGCGCTGGCG	0.587	10	122
HSD17B1	3292	hgsc.bcm.edu;broad.mit.edu	37	17	40705302	40705302	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GCCGCGTGGACGTGCTGGGTG	0.642	5	46
ANKRD40	91369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48773483	48773483	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TGGAAATCTTGGAGTCGAGCA	0.393	20	85
ARMC6	93436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	19162910	19162910	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CCTTCGATGACGACATCCGTG	0.572	15	46
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	22162039	22162039	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CTACCTTGGATAACCAGCTGG	0.562	12	39
PALMD	54873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	100133315	100133315	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AGAACAAAGTATCCTCAGGTA	0.433	16	193
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	120438457	120438457	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AACCTGATTCCCAAACTGCTC	0.438	44	66
OR2G3	81469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	247769424	247769424	+	Silent	SNP	C	C	T	rs144392521		TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	ATTTTATTTGCGAAGTACCAG	0.453	21	91
BANF2	140836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	17716423	17716423	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AGACTTCTCACTGCCTCAAGG	0.542	22	115
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	47592595	47592595	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GATGGGAAAGGCCTTGACATG	0.532	8	45
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu	37	20	49225174	49225174	+	Silent	SNP	C	C	T	rs144349290		TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TCTCATGCAGCGTGGGGATGA	0.657	12	181
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	21250764	21250764	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GCTTTCTTTAGGAAGGTAGTT	0.418	17	71
C2orf71	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	29287763	29287763	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CTGGGGCTGCGCCTCTGGCTG	0.657	15	35
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	160832717	160832717	+	Silent	SNP	A	A	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CTGCATCCTGATAAAAGAGCC	0.383	12	29
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	ATAAGCATGACGACCTATGAT	0.393	50	84
IGJ	3512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	71522083	71522083	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TAAGGCTGTTTCCACCATTTT	0.448	16	93
NEK1	4750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	170428878	170428878	+	Silent	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TCAGTGATTCGATTTTTTTGC	0.338	9	55
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	37351324	37351324	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CAGCCATCCTTTCCAGCCAAG	0.353	15	100
FBXL17	64839	hgsc.bcm.edu;broad.mit.edu	37	5	107197443	107197443	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GGCAGACATGTTGGGGGTCCA	0.582	5	86
LY6G5C	80741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	31644773	31644773	+	Silent	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GGTCATTGCAGAAATCCAGGA	0.463	15	109
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	46847698	46847698	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	ATTGGAGGACAAAACTTCCTT	0.423	19	125
ANKMY2	57037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	16650366	16650366	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CAGCAGAGGATTCTCATTTAC	0.378	15	90
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	2048769	2048769	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CTGGATATTTCGTGGACTTCA	0.542	13	75
NPBWR1	2831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	53852887	53852887	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TGGTGTTGGCCACTGCGGAGT	0.662	9	48
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	124266694	124266694	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TGTTATTTTCATAAGTCTGAT	0.358	26	283
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu	37	9	17747099	17747099	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CTGAAGGAACCAAGCTAGATG	0.363	6	61
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	77435241	77435241	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GAACCATACACTCCATTAGAA	0.363	24	91
RXRA	6256	hgsc.bcm.edu;broad.mit.edu	37	9	137300950	137300950	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CCTGGCCATGGGCATGAAGCG	0.657	5	73
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu	37	X	34962576	34962576	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AGTGCACAGCGTGGGAGGATA	0.498	6	80
ALAS2	212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	55042060	55042060	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CATCACGCTCCCCAATCCCAG	0.527	28	95
TRPC5	7224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	111024435	111024435	+	Splice_Site	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CATTGCGTTCCTATAATTGAA	0.403	32	140
TENM1	10178	hgsc.bcm.edu;broad.mit.edu	37	X	123785903	123785903	+	Silent	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GAGGGGAGTGCTGTGTATCAT	0.433	4	64
SLC17A4	10050	broad.mit.edu;ucsc.edu	37	6	25779395	25779395	+	Silent	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GGGCTAAAGAGCAGACATTCA	0.478	56	120
SEPN1	57190	broad.mit.edu;ucsc.edu	37	1	26135530	26135530	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	ATCATCCACCGGCTCCTGAGC	0.667	17	127
TBC1D25	4943	broad.mit.edu;ucsc.edu	37	X	48418056	48418056	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AGGCCGAGAGCGGATGGACTA	0.587	26	40
IL12B	3593	broad.mit.edu;ucsc.edu	37	5	158753714	158753714	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	ATCTTTCTTCAGTTCCCATAT	0.502	9	67
RASGRF2	5924	broad.mit.edu;ucsc.edu	37	5	80366346	80366346	+	Silent	SNP	A	A	G			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	AACGAATGCGACCTTACCAAA	0.423	31	75
RGL2	5863	broad.mit.edu;ucsc.edu	37	6	33260297	33260297	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CTGATGACACTTGGAGCCTTG	0.522	18	129
CMTM1	113540	broad.mit.edu;ucsc.edu	37	16	66612848	66612848	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GAAGCTTTCCCCCGCCAAGGA	0.602	14	65
DUPD1	338599	broad.mit.edu;ucsc.edu	37	10	76803652	76803652	+	Silent	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CCACGCCGTGGTACTGGATGT	0.647	20	118
CEACAM5	1048	broad.mit.edu;ucsc.edu	37	19	42213763	42213763	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GGATGGCAACCGTCAAATTAT	0.488	50	135
TMPRSS11E	28983	broad.mit.edu;ucsc.edu	37	4	69343128	69343128	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TTTGGAGTAACAATAAAACCT	0.368	33	224
GNL1	2794	broad.mit.edu;ucsc.edu	37	6	30514076	30514076	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	GTCTCTGGATGGGACTCCCAG	0.547	5	12
SHROOM4	57477	broad.mit.edu;hgsc.bcm.edu	37	X	50377586	50377586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	CTCTCCATGTGGGGGACTGCT	0.527	18	99
TP53	7157	hgsc.bcm.edu	37	17	7572963	7572963	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TGAACATGAGTTTTTTATGGC	0.527	83	205
ATRX	546	broad.mit.edu	37	X	76909629	76909629	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-8167-01A-11D-2253-08	TCGA-DU-8167-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abec779c-5d98-4e48-ae7f-33158ced8b86	3c841a53-9778-4460-89ac-4fb1d9dd5f73	TTAATACGTCGCCTTTTCTTT	0.328	12	97
