Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PA2G4	5036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	56504345	56504345	+	Silent	SNP	C	C	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	TCTTTCAGGCCAAGGATGCAG	0.463	32	47
BTBD11	121551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	108012060	108012060	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	TGCGCCAGCCGCAACAGCAAG	0.597	27	69
EVL	51466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	100551166	100551166	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CTTCAGAGTCGTTGGAGTCAA	0.532	47	55
OCA2	4948	hgsc.bcm.edu;broad.mit.edu	37	15	28273113	28273113	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CTCCCTGCTTAGCAGGTATCT	0.552	13	156
HERC2	8924	hgsc.bcm.edu;broad.mit.edu	37	15	28473408	28473408	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CATGCCGGAATTGAGCAGAAG	0.592	7	68
FES	2242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	91437242	91437242	+	Silent	SNP	C	C	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GGGCCTCCCCCTATCCCAACC	0.607	198	329
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu	37	16	10551310	10551310	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	TGTGAATTATGAGCCTTCTAA	0.323	12	117
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	3656701	3656701	+	Silent	SNP	C	C	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CAGGGCACAGCTCAGAGCCAA	0.582	13	83
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	rs28934574		TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	TCTGTGCGCCGGTCTCTCCCA	0.557	36	6
SPPL2C	162540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	43922533	43922533	+	Silent	SNP	G	G	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CCAGCCAGCGGCCCCTCCGCC	0.682	14	74
MRPS26	64949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	3027057	3027057	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	AAGGTGCACGAGGCCCGAGCC	0.701	13	27
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	ATAAGCATGACGACCTATGAT	0.393	21	48
DRD5	1816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	9784116	9784116	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GATGACTCAGCGCATGGCCTT	0.607	6	52
FGG	2266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	155530846	155530846	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GAATTGCTGGTTAGCTTTCAG	0.388	43	52
UGT3A1	133688	hgsc.bcm.edu;broad.mit.edu	37	5	35954579	35954579	+	Splice_Site	SNP	A	A	G			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GCCGACTTGTACCTGTTGGCG	0.552	6	48
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	160758095	160758095	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	TTCCCGGAGGTGGGTGTTGAT	0.423	20	126
PON1	5444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	94940783	94940783	+	Silent	SNP	G	G	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GTTTATGTCTGATGGTTTTTA	0.383	32	57
CBLL1	79872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	107398758	107398758	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	TCACTTGAAAATGTTCATCCT	0.468	92	134
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	131848943	131848943	+	Silent	SNP	G	G	A			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GCTTGTCCTCGCTCAAGGAGT	0.607	10	72
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	135048807	135048807	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CTCTCTACAGAACTGCTGTTG	0.388	47	126
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	120768315	120768315	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	ATGTTCTTAGTAAATGGTGGG	0.348	7	66
EIF1AX	1964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	20156713	20156713	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CTCATTCTTACCCCTGCGTCT	0.308	25	9
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76938407	76938407	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GAACTTTTTCGTTTCCTTTTT	0.338	47	13
TBC1D8B	54885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	106083910	106083910	+	Silent	SNP	T	T	C			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GTGCTGTTAATGACATGGCTA	0.358	30	33
TEKT4P2	100132288	broad.mit.edu;ucsc.edu	37	21	9907312	9907312	+	RNA	SNP	G	G	A			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CACTTCTGGCGGTCGATGAAG	0.582	9	45
MPP7	143098	broad.mit.edu;ucsc.edu	37	10	28378749	28378749	+	Missense_Mutation	SNP	C	C	T	rs145943944	byFrequency	TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	TCTACTAAGACGAAAACTTTT	0.313	10	37
TNC	3371	broad.mit.edu;ucsc.edu	37	9	117826102	117826102	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GAGAGAGGGGTTGTGCTGAAG	0.522	21	107
OXSM	54995	broad.mit.edu;ucsc.edu	37	3	25833094	25833094	+	Nonsense_Mutation	SNP	C	C	T	rs147184138		TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	GGTCAGCATTCGATATAAACT	0.433	11	69
GNAI1	2770	broad.mit.edu;ucsc.edu	37	7	79818476	79818476	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-A5TP-01A-11D-A289-08	TCGA-DU-A5TP-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d307950-3327-4ac5-95e4-5941a28fb077	dba5aeaa-a6d1-4f01-a963-e6d523f8783d	CAGTAACACCATCCAGTCAAT	0.398	6	23
