Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55860898	55860898	+	Missense_Mutation	SNP	G	G	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	TCTATTCACTGTTTTGGGAAA	0.378	159	330
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	101818852	101818852	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CCCTTTTCCCGTAGACCAACA	0.348	46	77
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	46242662	46242662	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	TTCTGTTTCTCGAGCAGAAAT	0.343	46	96
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	116460278	116460278	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	TGGTGCAGGTGAAGACTGAGC	0.473	15	38
OR11H4	390442	hgsc.bcm.edu;broad.mit.edu	37	14	20710969	20710969	+	Missense_Mutation	SNP	G	G	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CTTCTTTGTAGACTTAAGACC	0.418	5	103
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	C	T	rs121912660		TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GCGCCGGTCTCTCCCAGGACA	0.542	64	20
SRCIN1	80725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	36714502	36714502	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GTTGAGATAGCGCAGCCGTTC	0.701	42	55
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	2913269	2913269	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GCATTCCACCTCATCGTGCAC	0.592	32	62
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	3532532	3532532	+	Missense_Mutation	SNP	G	G	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CTCGGGGGGCGGCACAGCTGA	0.652	7	56
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu	37	1	186948459	186948459	+	Missense_Mutation	SNP	A	A	G			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GTTCCAAGGGAAACTGAGGAA	0.333	8	150
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	40045243	40045243	+	Silent	SNP	C	C	T			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GGATCTGGGCCGCCAATGCTG	0.552	86	190
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179456089	179456089	+	Silent	SNP	G	G	A			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	AGTGCTCATCGGTTTTAATCT	0.433	284	593
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	ATAAGCATGACGACCTATGAT	0.393	46	108
SLC23A3	151295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220034279	220034279	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GGTAGACATACCACATGAAAA	0.582	101	269
SENP7	57337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	101177814	101177814	+	Missense_Mutation	SNP	T	T	G			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	TGGTGATGACTTGGAAGTAAC	0.358	87	433
ZMAT3	64393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178748788	178748788	+	Splice_Site	SNP	C	C	G			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GATTTTTACCCTAGAAATAAA	0.398	44	77
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	74303981	74303981	+	Missense_Mutation	SNP	A	A	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CAATTGAGAAACCCACTggag	0.363	23	121
SPZ1	84654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	79616896	79616896	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	TAATGGAGTCGGTTTCCAAAC	0.413	71	130
GPR98	84059	hgsc.bcm.edu;ucsc.edu	37	5	89914934	89914934	+	Missense_Mutation	SNP	C	C	A			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CTTGGATGGCCAAGGACTGTT	0.259	5	27
TRIM52	84851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	180687093	180687093	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GGCCTCTTTGTCCACCTCACA	0.542	108	171
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	144872125	144872125	+	Missense_Mutation	SNP	C	C	T	rs114254210	byFrequency	TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CTTAGAACAGCGCCATCCTCA	0.338	46	116
COG5	10466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	107002756	107002756	+	Silent	SNP	T	T	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	TATTTACCTGTCCACAAACAG	0.393	12	91
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	141301025	141301025	+	Missense_Mutation	SNP	A	A	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	ACTCTATTTGAAAAAAATGCT	0.363	25	154
KCNV1	27012	hgsc.bcm.edu;broad.mit.edu	37	8	110984685	110984685	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CACCTGTCCCGCACACACAGG	0.532	12	181
C9orf114	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	131586077	131586077	+	Missense_Mutation	SNP	G	G	C			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	TGACGTACAGGTCAAAGAGGA	0.642	4	10
ZFX	7543	hgsc.bcm.edu;broad.mit.edu	37	X	24229263	24229263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GGGATTTAGGCAACAGAGTGA	0.408	11	181
HEATR2	54919	broad.mit.edu;ucsc.edu	37	7	813720	813720	+	Missense_Mutation	SNP	A	A	G			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	GTGACAAAGGACATCCTGGCC	0.642	56	158
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939929	76939930	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E1-5303-01A-01D-1468-08	TCGA-E1-5303-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4fecec7-4ee8-4b07-be22-6f816260f0b0	8f5ce4b8-2c8d-4411-b159-0035f461c34b	CCAAGTCCAACAAAGGCTCTGG	0.381	232	123
