Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	70451205	70451205	+	Silent	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CACCTGCTCACGGCTCGGTTT	0.532	107	189
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	9499964	9499964	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GCATTACAGGCGGTTCAGCTG	0.433	82	127
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	47726176	47726176	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GTAGACAAAATGGAAAAGAGC	0.428	21	69
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	39763607	39763607	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	TTTTTCTTCAATACTCTTAAA	0.338	7	25
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	39763628	39763628	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	AAGGTGTTTAACAGCTCGAGA	0.348	10	46
KMT2D	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49431213	49431213	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CTGCTGTTGGGACCCAGCCAA	0.627	12	6
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	88329160	88329160	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CCGGTCCCAAACCTCCAGCTG	0.532	45	76
BMP4	652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	54416985	54416985	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GGCCTGGTAGCCTGGTGGGGC	0.572	9	67
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GCACAAACACGCACCTCAAAG	0.542	28	3
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9057582	9057582	+	Missense_Mutation	SNP	G	G	C			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GGTGGTGATGGTCATTTGTGT	0.498	54	300
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9068570	9068570	+	Silent	SNP	T	T	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GCATTGTGTGTGTATCTGTGG	0.453	28	165
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	48945567	48945567	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CCTGGGAGCACCTGGTGTACT	0.647	53	46
PTPRH	5794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55693430	55693430	+	Missense_Mutation	SNP	A	A	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CTTCCTTACAAAGCTGAAGGG	0.622	36	93
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56244181	56244181	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CAACCAGCACGTAAAGGGATT	0.413	39	36
PLEKHN1	84069	hgsc.bcm.edu;broad.mit.edu	37	1	907741	907741	+	Silent	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	TGTGCCTTCGCGCTGTCACCC	0.677	5	19
PKLR	5313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	155261708	155261708	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	AGGTCGGTACCGAGACAGAAG	0.577	20	91
IGSF8	93185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	160064985	160064985	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GCCAGCCACGCGGTACAAGGG	0.617	10	47
SRMS	6725	hgsc.bcm.edu;broad.mit.edu	37	20	62178604	62178604	+	Silent	SNP	A	A	G			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CGCGGCGGACACTCAGCTCCC	0.697	7	7
TIMP3	7078	hgsc.bcm.edu;ucsc.edu	37	22	33255348	33255348	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	AGCATCATCAATGCCACAGAC	0.592	4	34
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	141739804	141739804	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GGAATGCAACGCCCATTTCCG	0.423	19	94
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	148653873	148653873	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CTTATAGGTGCTATACTTGGT	0.333	14	76
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	ATAAGCATGACGACCTATGAT	0.393	43	69
SMARCC1	6599	hgsc.bcm.edu;broad.mit.edu	37	3	47719787	47719787	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CATAAAATTTCGATATGCCAA	0.388	9	166
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	4304568	4304568	+	Silent	SNP	G	G	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GTTTGACAAAGAGGTTGGAAT	0.398	24	38
GUF1	60558	hgsc.bcm.edu;broad.mit.edu	37	4	44693681	44693681	+	Splice_Site	SNP	A	A	G			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	TTCCCTTTTTAGGCTCGAAGA	0.299	10	160
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	87770048	87770048	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CCCAAACTGGCAGAGCAGTCC	0.542	7	42
NPY1R	4886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	164246852	164246852	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	ACTGGACCTGTACTTATTGTC	0.368	16	36
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32188018	32188018	+	Nonsense_Mutation	SNP	G	G	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CATCCCCATGGCACGGCTGGC	0.622	17	95
NCOA7	135112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	126210341	126210341	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	TAGGGAGACATCCCATGGTTC	0.458	9	37
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	107823139	107823139	+	Splice_Site	SNP	G	G	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CATCACTTACGGTCTTCTCCA	0.522	22	40
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128432468	128432468	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GACGGGGGATGCAAGCTATGG	0.582	16	87
MUC2	4583	broad.mit.edu;ucsc.edu	37	11	1086051	1086051	+	Missense_Mutation	SNP	C	C	T	rs72655318		TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GAGTCCAGCACGGGCATCATC	0.632	20	30
FFAR1	2864	broad.mit.edu;ucsc.edu	37	19	35842815	35842815	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	CCGGAGGCCGTGCTATTCCTG	0.677	11	49
ANO8	57719	broad.mit.edu;ucsc.edu	37	19	17438523	17438523	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GCTTTCCACGCGCTGGCCGAA	0.682	26	41
FHDC1	85462	broad.mit.edu;ucsc.edu	37	4	153897446	153897446	+	Missense_Mutation	SNP	G	G	C			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	AGGAAAATAAGACCTGCCGCG	0.632	4	37
CENPF	1063	broad.mit.edu;ucsc.edu	37	1	214803886	214803886	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GGAGCTCTCCCGTCAACAGCG	0.537	37	246
SIMC1	375484	broad.mit.edu;ucsc.edu	37	5	175716891	175716891	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	GCCTACAGCACGGAGAATCAT	0.522	15	98
IL18	3606	broad.mit.edu;ucsc.edu	37	11	112025712	112025712	+	Missense_Mutation	SNP	G	G	A	rs61734549	by1000genomes	TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	AAAGTAAAGCGTATTGTCAAT	0.343	10	36
DGKH	160851	broad.mit.edu;hgsc.bcm.edu	37	13	42783569	42783569	+	Frame_Shift_Del	DEL	A	A	-			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	AATTGTGCACAAAAACAGAGC	0.378	40	49
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76855040	76855046	+	Frame_Shift_Del	DEL	TTTCTTC	TTTCTTC	-			TCGA-FG-7636-01A-11D-2086-08	TCGA-FG-7636-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69986481-decd-42b7-9286-6850f1956764	667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e	TTTTCCCTTTTTTCTTCTTTCTaaaaa	0.353	63	73
