Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
BMI1	648	hgsc.bcm.edu;broad.mit.edu	37	10	22618234	22618234	+	Silent	SNP	A	A	G			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	ATGCTGGAGAACTGGAAAGTG	0.483	4	50
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	48152190	48152190	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GTTCCCTGGAACCAAGTATTG	0.428	11	13
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	9232315	9232315	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	CAGTACATAGATGTTAGGAGC	0.433	8	13
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	131466566	131466566	+	Missense_Mutation	SNP	C	C	T	rs144030317		TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GCTGTATACGCGGGACAATTC	0.587	15	53
EIF4A1	1973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7481686	7481686	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	CGGTTTGGCCGTAAAGGTGTG	0.507	10	94
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	ATGGTGGGGGCAGCGCCTCAC	0.652	26	19
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	51901156	51901156	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	AAAAGGTGGACCTCACTCGCT	0.547	11	31
TMEM104	54868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72791232	72791232	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GTGCCCTTCTCCCTCATGCAG	0.567	8	28
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179592490	179592490	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	TAAACCATTTTATTTTAAATG	0.413	8	98
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	ATAAGCATGACGACCTATGAT	0.393	8	24
ALPP	250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	233243710	233243710	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	CTTCTGGAACCGCGAGGCAGC	0.632	9	101
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	10083383	10083383	+	Missense_Mutation	SNP	T	T	G			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	TGACCCAAACTTCCTATTGAA	0.438	13	29
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	184042736	184042736	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	CGCTCTTTAGGGAATATCAAG	0.483	22	55
CPN2	1370	hgsc.bcm.edu;ucsc.edu	37	3	194062742	194062742	+	Silent	SNP	C	C	T	rs114433224	byFrequency	TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GGGGCAGCTCCGAGATGTTGT	0.612	4	37
LETM1	3954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	1836604	1836604	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	TCTTTGGTGGCGCTGCCCTTG	0.547	13	93
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	125590681	125590681	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	TCAAATTCACTACTTGGTGAA	0.433	23	72
RWDD2A	112611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	83904244	83904244	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	ATGTTTCCTAACCAAGGAGAA	0.443	8	17
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	151055100	151055100	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GAGAGTGGACTCAAACGGGGC	0.587	13	41
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu	37	9	119144692	119144692	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GGGAGACAATTATTGTGATGC	0.527	9	99
VAV2	7410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	136641200	136641200	+	Silent	SNP	C	C	T	rs150295787		TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GGCTGATGGGCGGCTGGTGGC	0.617	26	66
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	32456488	32456488	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	CTCTGAATGTCGCATCAAATT	0.363	7	13
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70341257	70341257	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	AGGATGAATTGCTTAAACTGC	0.498	8	75
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	110385328	110385328	+	Silent	SNP	T	T	C			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	CTTTAGCCAATAAGAAGAAGG	0.388	23	68
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	141291734	141291734	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GGGGAGTCGTTGTCAACGTTG	0.522	18	107
DNM1P46	196968	broad.mit.edu;ucsc.edu	37	15	100331300	100331300	+	RNA	SNP	G	G	A			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	GCAAGTGGAGGTGTTCATCAG	0.592	49	55
SEMA3B	7869	broad.mit.edu;ucsc.edu	37	3	50313252	50313252	+	RNA	SNP	G	G	T			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	TTTCCAGCGCGCAGGGGTGAC	0.692	10	27
MBNL3	55796	broad.mit.edu;ucsc.edu	37	X	131520820	131520820	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	TATCAGTTGCAGTGTACCAGG	0.488	20	44
FAF2	23197	broad.mit.edu;hgsc.bcm.edu	37	5	175913383	175913384	+	Frame_Shift_Ins	INS	-	-	A			TCGA-FG-A4MY-01A-11D-A26M-08	TCGA-FG-A4MY-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f6e09da5-6fae-4bec-a234-735728c4b4ad	494f3477-0516-47ea-beaf-572109ff74f8	ATTGAATGAGCAAGAGGGCGTA	0.485	10	53
