Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SIK3	23387	hgsc.bcm.edu;broad.mit.edu	37	11	116719848	116719848	+	Silent	SNP	G	G	A			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	AAGCATCGTCGCTGTTCTGGA	0.597	8	69
RPUSD1	113000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	837118	837118	+	Missense_Mutation	SNP	G	G	A	rs138346352		TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	CCGGCCCTCCGTGCTGTTCCT	0.692	6	14
SMPD3	55512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	68398674	68398674	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	GTTATCAAAGTTGAAATCTCC	0.572	7	54
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577138	7577138	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	AAAGCTGTTCCGTCCCAGTAG	0.527	22	7
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	175048764	175048764	+	Silent	SNP	C	C	T			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	GCTGTCCCGGCGACTGCAGCG	0.667	12	10
NINL	22981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	25436318	25436318	+	Silent	SNP	C	C	T			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	CCTGCTCCTTCAGCTTATCCA	0.488	57	147
NINL	22981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	25436402	25436402	+	Silent	SNP	C	C	T			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	CTGTGGCTTTCAGCTGTTTCT	0.537	73	229
SSB	6741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	170667377	170667377	+	Silent	SNP	C	C	T			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	GGGGATAATTCTATTTAAAGA	0.353	23	50
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179569078	179569078	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	CATGTCATGGTGCAAGTCTGG	0.423	21	147
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179641669	179641669	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	TTTGCATCTTGTAGTGTCTCT	0.463	8	62
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	ATAAGCATGACGACCTATGAT	0.393	24	44
MTERFD2	130916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	242039161	242039161	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	GGATCTAACACAAGATAACTC	0.498	14	96
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	47427857	47427857	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	GCCTACGGGCGCGCCCTGGAC	0.642	18	51
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	80327819	80327819	+	Silent	SNP	A	A	G			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	TGGTAACCCAACCCATTGACT	0.438	29	81
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	131329917	131329917	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	CTGTGTCTGCATCTTCTCCAG	0.547	9	14
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu	37	6	29080500	29080500	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	AAGTTCATTGCCCTCTTTTAT	0.448	4	60
TAS2R16	50833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	122635637	122635637	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	ATTGTCAAGGACTCAAGCACA	0.453	17	56
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	119139910	119139910	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	CTGATTCACTGTGTCAAAGGC	0.473	16	34
INPP5A	3632	broad.mit.edu;ucsc.edu	37	10	134521843	134521843	+	Silent	SNP	C	C	A			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	AAGGCTTCATCCGGACGAGGT	0.463	7	31
ZPBP	11055	broad.mit.edu;ucsc.edu	37	7	49977166	49977166	+	Silent	SNP	T	T	C	rs138428432		TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	TGCTATTGCATTGAAGGCAAT	0.343	38	86
FSIP1	161835	broad.mit.edu;hgsc.bcm.edu	37	15	39910298	39910305	+	Frame_Shift_Del	DEL	CTGGAAAG	CTGGAAAG	-	rs34939408		TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	GATGATGGACCTGGAAAGCTGGGGGAAC	0.38	21	93
TLR7	51284	broad.mit.edu;hgsc.bcm.edu	37	X	12906637	12906645	+	In_Frame_Del	DEL	CGGAAAAGG	CGGAAAAGG	-			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	CCTCCAGCTCCGGAAAAGGCTCTGTGGGA	0.474	41	67
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76855981	76855982	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HT-7474-01A-11D-2024-08	TCGA-HT-7474-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c068572-2fc4-4547-8f85-697edb9db0d0	e28a47e8-8e77-4f3f-802c-3f7709ad5da6	GAAAATCTTGGAAAAGCTTTGC	0.361	88	76
