Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	26241102	26241102	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CTGATACATGGGAAATCACTG	0.328	16	52
TYR	7299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	88911234	88911234	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TGCTGTCCACCGTGGAGCGGG	0.547	21	42
TEAD4	7004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	3129912	3129912	+	Silent	SNP	C	C	T			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TCTCTGCCTTCCTGGAGCAGC	0.682	25	53
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	54306802	54306802	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TTCAGAAAATCAGTTTTTCAC	0.428	12	35
GNAO1	2775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	56388962	56388962	+	Nonsense_Mutation	SNP	C	C	G			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	GCGGCTTGTACTGACCTCTTG	0.527	18	51
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576	by1000genomes	TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	GGCACAAACACGCACCTCAAA	0.542	18	14
RBFADN	100506070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	77794645	77794645	+	Silent	SNP	G	G	C			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	AATTTGCCTCGAAAACCAAGT	0.632	14	39
FSD1	79187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	4318904	4318904	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CCCTCAGGTCGTGGGGGACGG	0.597	22	36
C19orf66	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10202008	10202008	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TTCCACTGCCCGAAGTGTCGG	0.692	10	22
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56321528	56321528	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CCCATCAGGAACACATTGAGA	0.388	12	34
ZSCAN5A	79149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56736304	56736304	+	Missense_Mutation	SNP	C	C	T	rs145104621	byFrequency	TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TCAGGGTCCACGTCGTGATTT	0.532	14	82
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	11184641	11184641	+	Silent	SNP	C	C	T			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CATCCTGGCGCAGATCTTCAT	0.507	14	54
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186946833	186946833	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TGTCTTTAAACCCAAGAATCC	0.443	30	90
GREB1	9687	hgsc.bcm.edu;broad.mit.edu	37	2	11728938	11728938	+	Missense_Mutation	SNP	C	C	T	rs151098036	by1000genomes	TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CTCTTGTACACGTGCTACCAG	0.592	7	91
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	49190307	49190307	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TGAGGTAGATGTGGATATAGC	0.527	10	29
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	160295595	160295595	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TACTTTGAtcttcttcttctt	0.363	13	110
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	ATAAGCATGACGACCTATGAT	0.393	30	63
CXCR2	3579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	219000407	219000407	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CATCGACCGGGCTCTGGATGC	0.592	27	69
UGT1A6	54578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	234602275	234602275	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	TTCCCAACGAGTGGCCAACTT	0.448	63	131
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	101447686	101447686	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	ATAGGCCATGGAACAGATCAA	0.353	35	67
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279		TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	AATGATGCACATCATGGTGGC	0.378	12	83
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	55152105	55152105	+	Missense_Mutation	SNP	A	A	G	rs121913268		TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	ATCATGCATGATTCGAACTAT	0.498	8	156
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76813082	76813082	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CTGCTTAGTTACTTGCCGATC	0.348	39	25
MAU2	23383	broad.mit.edu;ucsc.edu	37	19	19456112	19456112	+	Splice_Site	SNP	G	G	A			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CCTTCTTCCAGGGCCTGTACT	0.672	35	70
PRDM13	59336	broad.mit.edu;ucsc.edu	37	6	100062262	100062262	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	CTGTACTCGCGCAAGTATGGG	0.662	3	27
TRIM35	23087	broad.mit.edu;ucsc.edu	37	8	27145295	27145295	+	Silent	SNP	C	C	T			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	GGACCAGGGGCGACGTGGCTG	0.667	4	10
TUBB4B	10383	broad.mit.edu;ucsc.edu	37	9	140136262	140136262	+	Silent	SNP	G	G	A			TCGA-HT-7478-01A-11D-2024-08	TCGA-HT-7478-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ded8014c-bb43-4e2b-af8e-0975936031c3	ceb62f6b-8044-4a7b-97f9-da9ad10c8021	GCATCAACGTGTACTACAATG	0.687	5	40
