Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	5948527	5948527	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	CTTCCTCCCGGTGGAAGACCT	0.567	35	124
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu	37	11	1269703	1269703	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	CACTACCAAAGTGCCGACTAC	0.642	20	157
ATG13	9776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	46671757	46671757	+	Silent	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TTTCCTACACGGTGTACAACA	0.433	35	63
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	20345254	20345254	+	Silent	SNP	C	C	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TGTTTTATACCATCTTTACTC	0.358	16	114
MAX	4149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	65544633	65544633	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	GTGCTCACCTTGCTGCTCCAG	0.557	17	62
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	27018008	27018008	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TATGACCAGGCGATCCGCAAT	0.552	9	70
KRT37	8688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39580429	39580429	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	CAGGTAGTTGGCCAGGCGGTC	0.582	55	114
ST6GALNAC1	55808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	74625638	74625638	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	GTCTCCGGTGGTGTGGGCCTT	0.597	8	40
USP14	9097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	202880	202880	+	Splice_Site	SNP	C	C	T			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TCTTTCTTAGCGACTTCAGGA	0.353	11	54
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42796451	42796451	+	Splice_Site	SNP	G	G	T			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TCCTGCGGCAGAATCACCTAT	0.662	41	68
NPR1	4881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	153655965	153655965	+	Silent	SNP	C	C	T	rs142090901	byFrequency	TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	GCTTTGACAACGAAGACCCAG	0.587	32	142
CD244	51744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	160811091	160811091	+	Silent	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	ATGTGTGAGTGCCATTAATGT	0.517	32	152
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	205897099	205897099	+	Silent	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TGATGACGTAGCTCACGATGG	0.632	12	86
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	5905619	5905619	+	Splice_Site	SNP	A	A	G			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	ATTTTCCAGAAAAAAGAACTC	0.443	18	24
KCNG1	3755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	49626813	49626813	+	Silent	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	GGAAGGAGGCGTCCGAGGTGC	0.672	11	39
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	ATAAGCATGACGACCTATGAT	0.393	47	65
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52255381	52255381	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	GAGGCGCTGGCGCAGCCGCAC	0.706	5	27
PDGFA	5154	hgsc.bcm.edu;broad.mit.edu	37	7	540795	540795	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	CTTGTGGTCGCGCAGGCGCAC	0.542	15	236
PIGO	84720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35093984	35093984	+	Silent	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	CCACACCCAGGAAGTGAGCAA	0.557	12	44
DNAH11	8701	broad.mit.edu;ucsc.edu	37	7	21789848	21789848	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	AGGAGAAATCCCAGATCTGTT	0.348	7	11
MYH8	4626	broad.mit.edu;ucsc.edu	37	17	10300214	10300214	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	ATTCTGGAGCCGCTGCTTCGT	0.488	20	49
LATS2	26524	broad.mit.edu;ucsc.edu	37	13	21549240	21549240	+	Silent	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	CGCTGGCATCGTTCCAAGGGC	0.557	51	152
DCHS1	8642	broad.mit.edu;ucsc.edu	37	11	6653011	6653011	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TGCTGCTCACGGTCCAGGGTT	0.577	31	25
ZNF91	7644	broad.mit.edu;ucsc.edu	37	19	23542477	23542477	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	GGTTTCTCTCCGGTGTGCAAC	0.398	26	60
HRSP12	10247	broad.mit.edu;ucsc.edu	37	8	99129320	99129320	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	GATCAAGGACGACATGGCTAA	0.612	10	87
AFTPH	54812	broad.mit.edu;hgsc.bcm.edu	37	2	64779134	64779134	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	TGGTGAAAAGCCTCCTTGTCT	0.403	18	83
ENPP3	5169	broad.mit.edu;hgsc.bcm.edu	37	6	132059230	132059230	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HT-7480-01A-11D-2086-08	TCGA-HT-7480-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b0a47b5-0913-43b0-8508-71641e8d0521	c8ab24ab-a8ec-454b-9f9b-056ec420144b	AAGAAATGGAGTAAATGTGGT	0.313	14	48
