Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CPSF7	79869	hgsc.bcm.edu;broad.mit.edu	37	11	61183777	61183777	+	Silent	SNP	A	A	G			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	GAGGAGGAGGAGGGACCCCAA	0.617	5	71
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	67269773	67269773	+	Silent	SNP	C	C	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CCAGGATGCGCTGTCTCCTCT	0.612	27	64
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	93822035	93822035	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	TACGGGATGATAAGAACTTTT	0.517	27	77
GJB2	2706	hgsc.bcm.edu;broad.mit.edu	37	13	20763148	20763148	+	Silent	SNP	G	G	A			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	TGAACACTGTGAAGACAGTCT	0.488	4	73
GJB2	2706	hgsc.bcm.edu;broad.mit.edu	37	13	20763400	20763400	+	Missense_Mutation	SNP	G	G	C	rs111033253		TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	TCTCCCCCTTGATGAACTTCC	0.547	4	81
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	98658457	98658457	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	GATACTGCAGAAGAAAAATTT	0.388	20	190
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	94841633	94841633	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CTTGGACCGCCGTCTCAGCCT	0.592	7	59
CPNE2	221184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	57147304	57147304	+	Silent	SNP	C	C	G			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	AGTTCGCGCTCTTTGACCAGG	0.582	9	60
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	GCACAAACACGCACCTCAAAG	0.542	22	13
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	28545875	28545875	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	TGGTACTGTCCCAGTGCGAGC	0.507	69	162
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	66525030	66525030	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	ACAAGTGGGAACGTCTTACGG	0.398	16	151
LLGL2	3993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	73567818	73567818	+	Silent	SNP	G	G	A			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CCCTGCGTGTGCCTCCCGCCG	0.672	8	85
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42930578	42930578	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	TCTGTGTCTGAAGATGATCCC	0.473	48	67
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42930579	42930579	+	Silent	SNP	A	A	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CTGTGTCTGAAGATGATCCCA	0.473	48	66
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	ATAAGCATGACGACCTATGAT	0.393	40	116
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	171427368	171427368	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	TAAAGCATTCTCTTGGATAGC	0.413	41	103
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	41015610	41015610	+	Silent	SNP	C	C	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CTGTTTCATCCGGGGAGCTGG	0.512	55	168
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	156742958	156742958	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CGGGCGCTTTTAGCGGCGAAC	0.672	21	73
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	73849082	73849082	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	GGCCAGGAAGGCTCTGTCGGA	0.542	43	119
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	121238908	121238908	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	GATGAGGTGACGACAGACAGT	0.483	32	60
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	126075804	126075804	+	Silent	SNP	G	G	C			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CTCCTGAAAAGACATCAGCAA	0.423	71	149
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu	37	X	117032912	117032912	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	GGTGATGGTGTGGTTTCTTCT	0.418	13	152
RP11-726G1.1	0	broad.mit.edu;ucsc.edu	37	12	9717870	9717870	+	RNA	SNP	A	A	T			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	CCAACGGATGAATTCCCATGG	0.448	17	16
TCF12	6938	broad.mit.edu;hgsc.bcm.edu	37	15	57555366	57555369	+	Frame_Shift_Del	DEL	AAAG	AAAG	-			TCGA-HT-7601-01A-11D-2086-08	TCGA-HT-7601-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c1c39b-845d-4939-8f36-e74df0b879f4	1f027233-400d-4586-91d7-02f137b0a7d9	GACTGAAAACAAAGAAAAGGATGA	0.382	17	25
