Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
POLL	27343	hgsc.bcm.edu;broad.mit.edu	37	10	103343337	103343337	+	Silent	SNP	G	G	A	rs148400497	byFrequency	TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	AGACAGGCACGCTCTCACTGA	0.562	7	88
GPR162	27239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	6933475	6933475	+	Silent	SNP	C	C	T	rs146153056		TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CACTGCATGCCGTCATGGGCA	0.617	28	61
FREM2	341640	hgsc.bcm.edu;broad.mit.edu	37	13	39265629	39265629	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	ATTCAGTATGTCCATTTGGGG	0.413	11	184
RFX7	64864	hgsc.bcm.edu;broad.mit.edu	37	15	56387426	56387426	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CTATGTAGCTGCTGGCTATAT	0.393	8	149
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	82554109	82554109	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	ATCCAAACTGTTGAGCACCAT	0.333	23	110
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu	37	17	7708392	7708392	+	Splice_Site	SNP	G	G	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	AGGCCATGCGGGTACCAGGGG	0.582	4	72
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10303716	10303716	+	Silent	SNP	G	G	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CCTTGGCTTTGGAAATGGCCT	0.438	82	227
SLC25A39	51629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42399117	42399117	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	TCGTGCCTCACGATCTTCACG	0.637	13	41
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48652951	48652951	+	Silent	SNP	G	G	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	TGATTGCCACGCAGTTCTCAG	0.572	29	60
HAS1	3036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	52220383	52220383	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CGGGGGTCCTCGTCCAGTACC	0.622	16	94
CLIC4	25932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	25140630	25140630	+	Silent	SNP	A	A	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CCCACCCACCATTTATAACTT	0.398	13	87
GEMIN6	79833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	39008705	39008705	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	GTCTGTGACCGGAATTATGGG	0.443	37	113
UXS1	80146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	106746145	106746145	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	ATGTTTAATGTCCCAATCGTA	0.378	15	26
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	133721292	133721292	+	Splice_Site	SNP	C	C	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	TCATTTCTTACCTCTAGAGCT	0.368	14	54
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	ATAAGCATGACGACCTATGAT	0.393	37	77
MAATS1	89876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	119465994	119465994	+	Silent	SNP	C	C	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CTATAAGCTCCTACCTAGAAG	0.373	16	113
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	154542876	154542876	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	TGCAGTGACTTTGAGAGGTCT	0.433	9	62
GIMAP5	55340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150439641	150439641	+	Silent	SNP	T	T	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	AAGAGGTCTTTGGGACAGGGG	0.582	16	136
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	131370312	131370312	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CCGCGTGGTGAAGCTGGACGT	0.677	9	35
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	33467861	33467861	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	ACTCAGTGGACGGAGACTGGA	0.602	6	51
CORO2A	7464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	100897226	100897226	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	TGGGGATGCTCCAGATCTTAA	0.632	26	64
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70626502	70626502	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	GATGAGGTTCGCAGAAAATCT	0.398	7	42
TANGO6	79613	broad.mit.edu;ucsc.edu	37	16	68900994	68900994	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	CTGCACAGATGTGAAGACACA	0.473	40	84
KDM6B	23135	broad.mit.edu;ucsc.edu	37	17	7752905	7752905	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	GAGGGGCCCCCCAAGGAGCTG	0.632	3	31
PTPRU	10076	broad.mit.edu;ucsc.edu	37	1	29585123	29585123	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	AGTTCAGCTACTTCCTGTACA	0.602	21	202
FIP1L1	81608	broad.mit.edu;hgsc.bcm.edu	37	4	54324903	54324904	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	GAAGAACGACATAGAGAAAGAC	0.381	11	41
