Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	26463288	26463288	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GAAGGCAGCAGTTGAGGAAGG	0.438	21	118
CYP2C19	1557	hgsc.bcm.edu;broad.mit.edu	37	10	96535297	96535297	+	Splice_Site	SNP	G	G	C	rs77576043		TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AAAACCAAGGGTGGGTGAACA	0.498	11	184
WDR96	80217	hgsc.bcm.edu;broad.mit.edu	37	10	105990460	105990460	+	Silent	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TTGCCATGACGCCCACAATTC	0.408	5	87
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu	37	11	6645159	6645159	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CACGACTGAGCTTTGGGGTGG	0.537	10	185
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu	37	11	6645181	6645181	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TGCCCACGGTCAGCTGCAGCC	0.562	6	119
RPUSD4	84881	hgsc.bcm.edu;broad.mit.edu	37	11	126075477	126075477	+	Missense_Mutation	SNP	C	C	T	rs143531642		TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATTTTCCCATCGTCCATGCGG	0.557	9	121
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu	37	13	113891149	113891149	+	Silent	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AACCACTGATTGCTTGTGTGG	0.358	4	70
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu	37	14	21838616	21838616	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GGCTTCAATCATTTTGTCAAA	0.383	4	62
CHD8	57680	hgsc.bcm.edu;broad.mit.edu	37	14	21861840	21861840	+	Silent	SNP	T	T	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CATAGTCTTGTGGGGTTGGTC	0.547	5	60
TRIM9	114088	hgsc.bcm.edu;broad.mit.edu	37	14	51446210	51446210	+	Silent	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TCAAGTTTTTTCTATTTAAGT	0.453	13	222
GATM	2628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45658331	45658331	+	Silent	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GATTGGGATCTTTAAAGGAGA	0.428	23	68
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu	37	15	48052514	48052514	+	Nonsense_Mutation	SNP	T	T	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CAAGGCAATATCCGGTTTTTA	0.418	3	59
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	85619979	85619979	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATAGAGAAGAGTTGTCCGTAA	0.294	14	150
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GCAGCGCTCATGGTGGGGGCA	0.642	65	50
ZNF207	7756	hgsc.bcm.edu;broad.mit.edu	37	17	30696691	30696691	+	Silent	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GGCAGGGACCGCCAATGGTGC	0.527	7	65
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38715155	38715155	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTGGAAAATGACAAGGAGAGC	0.498	7	61
C17orf47	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56620229	56620229	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TGTCAGCTGGCTTTGGGGTGT	0.507	48	89
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	67080574	67080574	+	Splice_Site	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CGCACGTACCTTTCTCGTGAT	0.453	159	387
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	78199637	78199637	+	Splice_Site	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TTTGGACAGAACCTGCTGGGA	0.587	26	163
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu	37	18	31325552	31325552	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATTTCATGTTGACAAGAATGG	0.532	5	116
MC4R	4160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	58038877	58038877	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GCACCTTGGCGGATGGCACCA	0.517	11	61
KRI1	65095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10671046	10671046	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	tcctcATAGCGTTTGTTGAGG	0.552	7	57
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	15651449	15651449	+	Missense_Mutation	SNP	G	G	A	rs146265982		TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CGGGCACTGCGTCAGCAGGGG	0.632	25	80
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	36340183	36340183	+	Silent	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTCGGGCCACGCACGGCAGCT	0.657	14	31
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	38643516	38643516	+	Silent	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TATCTCTTGATCCCCACTTCA	0.617	47	202
ZNF17	7565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	57932608	57932608	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AGAACTTACAAATGCAGCAAA	0.428	10	36
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19181078	19181078	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATCCACACGGCGCCAGTGAAG	0.637	15	54
SNRNP40	9410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	31744294	31744294	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AGTCACTGAATCTGCATGGCC	0.448	7	63
RLF	6018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	40702367	40702367	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AGATTGCCACCTGCAAGACAG	0.418	51	111
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	100353559	100353559	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AACTTTGGCTGAGCTAAATCA	0.373	6	57
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	115487052	115487052	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ACAAAAAGATATCAGAAGAAA	0.279	4	31
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	158325321	158325321	+	Missense_Mutation	SNP	G	G	A	rs142840776		TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TTTCTAGCGGGGCTCATGGAA	0.473	7	48
SCYL3	57147	hgsc.bcm.edu;broad.mit.edu	37	1	169823532	169823532	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AGAAGGCTTAATTTCTGGGAT	0.393	7	121
MROH9	80133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	170928725	170928725	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TATGAGTACATTGAGGACATG	0.363	8	55
OR2M7	391196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248486965	248486965	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTAAGATTTTCATTAATGCTC	0.403	8	71
TGM6	343641	hgsc.bcm.edu;broad.mit.edu	37	20	2411182	2411182	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATGTGCCTTGTCACCAAAGGA	0.458	4	63
TPX2	22974	hgsc.bcm.edu;broad.mit.edu	37	20	30388772	30388772	+	Splice_Site	SNP	G	G	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TTACTTTGCAGGTGCATAAGG	0.398	10	166
EIF2AK3	9451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	88913303	88913303	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATCCCACTGCTTTTTACCATG	0.353	10	137
PTPN4	5775	hgsc.bcm.edu;broad.mit.edu	37	2	120709680	120709680	+	Silent	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATTCTGGGGAACTCATGCTTC	0.403	7	117
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179463964	179463964	+	Silent	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CATATTCATGGCCTTCTAGCA	0.428	29	137
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ATAAGCATGACGACCTATGAT	0.393	26	73
NEK4	6787	hgsc.bcm.edu;broad.mit.edu	37	3	52802575	52802575	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GCAGCTCGCCGCTCTCGGCTA	0.453	7	127
CWH43	80157	hgsc.bcm.edu;broad.mit.edu	37	4	49000535	49000535	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TTTGTGGTTTCGTGGTACTGG	0.443	11	152
KDR	3791	hgsc.bcm.edu;broad.mit.edu	37	4	55981079	55981079	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTGGTAACTTTCATCATTAAT	0.373	4	58
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu	37	5	13792273	13792273	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ACAGAATCTCTCACTTCTTCT	0.423	4	70
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	32090257	32090257	+	Missense_Mutation	SNP	C	C	T	rs147353592		TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CCATTTTGGACGGGAGGGTCA	0.632	48	491
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	71493611	71493611	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CCAAGAAAAGAAAACTGATGA	0.403	16	36
AQPEP	206338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	115298645	115298645	+	Silent	SNP	C	C	T			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CGATCTGGAGCTGTGGCCGCA	0.701	24	97
FOXQ1	94234	hgsc.bcm.edu;broad.mit.edu	37	6	1313391	1313391	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TACCTCATGGGCAAGTTCCCC	0.652	4	78
TREML2	79865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	41160191	41160191	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TCCACATAGGGCTCTGGTCTT	0.587	7	46
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	106553291	106553291	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CCCCCCTACGGCATGAATTGT	0.587	10	65
IL6	3569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	22769188	22769188	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GTATACCTAGAGTACCTCCAG	0.458	11	72
GRB10	2887	hgsc.bcm.edu;broad.mit.edu	37	7	50686969	50686969	+	Silent	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GCTCATGGTCTTCCAAGCACC	0.443	6	123
INTS9	55756	hgsc.bcm.edu;broad.mit.edu	37	8	28625815	28625815	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GCTGTGTCCTCCACCTTAATA	0.502	11	196
TG	7038	hgsc.bcm.edu;broad.mit.edu	37	8	133912511	133912511	+	Silent	SNP	G	G	A			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TGCAGGCATCGGGGGCTGGCA	0.622	5	58
RORB	6096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	77257632	77257632	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	ACAGATAAAGCAAGAACCTAT	0.468	11	68
MSL3	10943	hgsc.bcm.edu;ucsc.edu	37	X	11783854	11783854	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AAAGAGTAGGTTCATTCTCGG	0.587	25	136
FMR1NB	158521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	147084823	147084823	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GCTTTGCTGAATTTTTTCTTT	0.373	7	23
UTY	7404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	Y	15522901	15522901	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GTCTGTGTTCACTTTGAACAT	0.413	22	37
TMEM175	84286	broad.mit.edu;ucsc.edu	37	4	944293	944293	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AGTGGCCTGGGCAGCACACAC	0.597	11	106
MKI67	4288	broad.mit.edu;ucsc.edu	37	10	129923863	129923863	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AGGTGCTGAGGCTCAGGGGAA	0.517	14	122
MBL2	4153	broad.mit.edu;ucsc.edu	37	10	54531233	54531233	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TCTCCCTTGGTGCCATCACGC	0.537	11	93
HOXC4	3221	broad.mit.edu;ucsc.edu	37	12	54447735	54447735	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TTGATGGACTCTAACTACATC	0.423	10	76
ARID1A	8289	broad.mit.edu;hgsc.bcm.edu	37	1	27100176	27100176	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTAGCCGCTACCCCCCgcagc	0.597	23	129
CAD	790	broad.mit.edu;hgsc.bcm.edu	37	2	27462334	27462334	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTATATCGATGGGCAGGTACG	0.567	25	69
FBN2	2201	broad.mit.edu;hgsc.bcm.edu	37	5	127782200	127782203	+	Frame_Shift_Del	DEL	TGTT	TGTT	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	AGTTTCACTCTGTTTGTGACCAGC	0.426	16	75
EPB41L2	2037	broad.mit.edu;hgsc.bcm.edu	37	6	131229973	131229976	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTCAGTTGTCTCTTTATTTCTTTA	0.284	16	38
NCOA4	8031	broad.mit.edu;hgsc.bcm.edu	37	10	51585027	51585029	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTTGGAGGCCAAGAAACCATTGT	0.522	13	22
ARID5B	84159	broad.mit.edu;hgsc.bcm.edu	37	10	63845531	63845531	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CAAACCTCGGAAACAGGAGAA	0.358	58	91
CDON	50937	broad.mit.edu;hgsc.bcm.edu	37	11	125891236	125891237	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GAGTTGAGAGAAAGAATTGTCA	0.475	19	73
PTPRR	5801	broad.mit.edu;hgsc.bcm.edu	37	12	71050530	71050532	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	TCCACAACTCCTTCTTCTTTCAG	0.433	43	159
C14orf37	0	broad.mit.edu;hgsc.bcm.edu	37	14	58605972	58605974	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GTGCTATCTCCCTCCTCCTTTCT	0.478	36	110
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu	37	19	11106926	11106928	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	CTCATCGACCAGAAGAAGGACAA	0.576	29	145
ATRX	546	broad.mit.edu	37	X	76875860	76875861	+	Splice_Site	DEL	CA	CA	-			TCGA-HT-7688-01A-11D-2253-08	TCGA-HT-7688-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35602eec-d9a6-4b1f-b4bf-0304d6f0337a	b1e48d0a-6c17-45b0-856c-58b9eba686c8	GATATTAACTCACACTCAATTA	0.317	9	34
