Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NEURL	9148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	105349295	105349295	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GCCGAGCGGGGTATCCCATCA	0.652	14	160
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	115380449	115380449	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	ATCCACTTCACATCTGCCCTG	0.478	37	222
PLAC1L	219990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	59810975	59810975	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TGGTTGATGGTCTCAGTTATC	0.393	11	56
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu	37	11	108380864	108380864	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AACGATAGAGGTGTGGCTCAG	0.463	16	151
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu	37	11	120355176	120355176	+	Silent	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CCATTCTTTGCCAAAGGCTGG	0.378	6	112
PYROXD1	79912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	21615672	21615672	+	Splice_Site	SNP	A	A	G			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AATGTTGTTTAGTTTGATCTA	0.373	28	96
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	39761740	39761740	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AATTCCTCCAGTTGAATCTTC	0.313	21	235
RILPL1	353116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	123983204	123983204	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AGGTCTGCCTCCAGCTCCACC	0.627	50	175
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	90650849	90650849	+	Silent	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TTGGGGACCTGGTCAGCAGCC	0.532	25	36
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu	37	15	51766595	51766595	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	ACACCGCCTCCAAAAACAGCA	0.368	8	103
MTFMT	123263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	65312542	65312542	+	Silent	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CACCGTAAGTCGCCCCCTCCA	0.413	7	40
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	30732740	30732740	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AGTGCCAGCTCCGACTCCTGC	0.612	42	107
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	30734516	30734516	+	Silent	SNP	C	C	G			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GGCCTCTTCTCAAGCTGGTCC	0.602	93	234
C16orf46	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	81094882	81094882	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TCCTGCTTGGCCTTTGGGAGA	0.498	19	157
ACKR6	83394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	6381927	6381927	+	Silent	SNP	T	T	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CCTGGTTGGCTCGCTCGATGA	0.632	12	64
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GCACAAACACGCACCTCAAAG	0.542	20	9
CCL25	6370	hgsc.bcm.edu;ucsc.edu	37	19	8122747	8122747	+	Nonstop_Mutation	SNP	A	A	G			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	gtccaagtttagcaatcccat	0.463	12	100
MUC16	94025	hgsc.bcm.edu;broad.mit.edu	37	19	9087885	9087885	+	Silent	SNP	A	A	G			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TAGTCTCTCCAGGAGCTGTCA	0.507	4	70
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9089322	9089322	+	Silent	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GACTCTCTGACGATTCTGAAG	0.498	51	269
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11347158	11347158	+	Silent	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CCTGCTCCACGTTGCCCTCGC	0.647	3	10
ATAD3C	219293	hgsc.bcm.edu;broad.mit.edu	37	1	1386075	1386075	+	Silent	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TGTCAAAGGACGCCCTGAATC	0.642	5	22
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	228529180	228529180	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GGGGGATGACCGCGCCTTCGA	0.637	20	33
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	10624439	10624439	+	Silent	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TTCTGCAGTCGGGCCCAGCAA	0.498	24	55
SPTLC3	55304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	13134724	13134724	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GGGATTCATTATCTATGGCAA	0.428	9	65
PROKR1	10887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	68873428	68873428	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GCTGGCCATCGCCATTGACAG	0.592	26	120
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	ATAAGCATGACGACCTATGAT	0.393	37	98
MLPH	79083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238449504	238449504	+	Silent	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	ACCCTGGGGACCCCGTCCAGT	0.607	8	31
RAB17	64284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238483770	238483770	+	Splice_Site	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GTAGCTCTTGGGCTGTGAACA	0.667	20	35
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52850942	52850942	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CTTGTACGCAGAGCTTCTTCG	0.577	37	277
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	135825112	135825112	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TGCCGCTGAGGAGTATGAGAC	0.463	35	78
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	142224106	142224106	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GCACTGACTCCGGCCACTCCA	0.388	39	322
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu	37	5	118829578	118829578	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TCCTGAGGCAGTCAAGGCTAA	0.473	5	72
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	130825275	130825275	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GCAAGATGAGTATTATTCCTC	0.269	10	18
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140249832	140249832	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AGGTGTCAACGGACAGGTGAC	0.602	18	125
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	150924794	150924794	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AAACTGCAAGCTTTTGTCAAG	0.483	9	43
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33656101	33656101	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	ACCAAGCACCGGCTCTTCACC	0.597	48	138
SLC17A5	26503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	74354177	74354177	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TCTGGACACGCCTTGGAAGTT	0.348	13	46
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	131996232	131996232	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GTGGCTGACAGCAATGTATCA	0.388	13	49
MAP7	9053	hgsc.bcm.edu;ucsc.edu	37	6	136709623	136709623	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TTCCATTGTGCGCCGTACAAC	0.498	16	52
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu	37	7	48313892	48313892	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TTCAAAATATTTGGCTTCATT	0.299	7	65
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	41552258	41552258	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GAAGTACAGCGGGAAGTCGGT	0.602	17	90
ZNF484	83744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	95610656	95610656	+	Missense_Mutation	SNP	C	C	T	rs139334933		TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GAAGACAACACGACTTAAAGG	0.368	44	74
TUBB4B	10383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	140137441	140137441	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CTGTGAACATGGTCCCGTTTC	0.652	6	43
MCTS1	28985	hgsc.bcm.edu;broad.mit.edu	37	X	119739938	119739938	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TTACAGCCATGAACATATAGA	0.299	4	60
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	122538740	122538740	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	ATATGGAACGGCATGGTTGGG	0.378	44	337
DCAF12L2	340578	hgsc.bcm.edu;broad.mit.edu	37	X	125299120	125299120	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CCGTACCTTGCGGTTGCTGGG	0.637	5	64
GABRA3	2556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	151336862	151336862	+	Silent	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	GGCTGTCCTGCACGTAGGTGG	0.522	93	253
LAMC3	10319	broad.mit.edu;ucsc.edu	37	9	133932363	133932363	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CCGGCCAGGGCTTTCCCCGCC	0.607	21	139
EIF2B4	8890	broad.mit.edu;ucsc.edu	37	2	27591981	27591981	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	TTGGCTCGACGCTCAGCCCGA	0.602	67	119
GDPD2	54857	broad.mit.edu;ucsc.edu	37	X	69652260	69652260	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	CACCACCAACGACTGCCAGCT	0.512	52	117
OR4A16	81327	broad.mit.edu;hgsc.bcm.edu	37	11	55110739	55110740	+	Frame_Shift_Ins	INS	-	-	A	rs77509752		TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	ATCCTGATGTGAAAAAAACATT	0.416	18	60
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939638	76939639	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HT-7689-01A-11D-2253-08	TCGA-HT-7689-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b95cd446-0fed-4da2-892f-24b39d073ab4	77467f98-3e82-4ce7-abbe-8e69e7a77dbe	AAAATTTAACATAACTGGAGTT	0.371	64	129
