Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	5979128	5979128	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	GCGGAGCAGCGCATCGGGCCC	0.622	13	32
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	123256167	123256167	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	CATCCCGGGTGGCCTCCGGGC	0.532	59	78
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	1270916	1270916	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	ACGGCCACCCCGTCCTCCACC	0.642	52	217
SAA4	6291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	18253209	18253209	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	GACCCTGGAACGGCTGCAACC	0.488	19	32
OR5A1	219982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	59211422	59211422	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	AGCCCTTTTCGTGTACTTGCG	0.537	134	187
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu	37	11	67941292	67941292	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	TGCAACTATTTTGGCTCCATT	0.299	6	76
PPP6R3	55291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	68337357	68337357	+	Silent	SNP	T	T	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	TAATTTGTTATTAAAACATGT	0.373	82	96
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7535330	7535330	+	Silent	SNP	T	T	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	ACCTCCAAGATCAAGTAAAGG	0.542	21	144
TNFRSF13B	23495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	16852148	16852148	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	CTCCTGAGCTCTGGTGGAAGG	0.522	87	128
OR7D2	162998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9296887	9296887	+	Silent	SNP	C	C	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	CTGTGGCCTCCTGGTTTTTGT	0.478	19	227
PPAN	56342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10224314	10224314	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	CACAGGTGCCAAGTCCTGCCC	0.617	15	30
FDX1L	112812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10421614	10421614	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	GCTTCACAGGCCCCTAGGGGT	0.617	8	42
NES	10763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	156642351	156642351	+	Silent	SNP	T	T	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	TCAGGGTTTCTTTTTCCAAAG	0.468	6	45
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu	37	1	185964003	185964003	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	TGGTCAAAGAGTGGATATTCC	0.413	5	88
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	247695072	247695072	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	AGAGACACCACAGCCACGTGG	0.542	46	94
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	3209830	3209830	+	Silent	SNP	G	G	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	CCATGGCACCGCTGACGGCCC	0.617	8	72
CSRP2BP	57325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	18168088	18168088	+	Silent	SNP	G	G	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	CATTCTTTCTGAGGCTCCGGC	0.413	62	72
CNBD2	140894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	34618499	34618499	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	ACCCCAGAAATACCTCCCCCC	0.463	166	211
SLC5A3	6526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	35468232	35468232	+	Silent	SNP	A	A	G			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	CCCCTAAGAAAGAAGCCCTGA	0.453	57	100
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	ATAAGCATGACGACCTATGAT	0.393	19	69
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	ATCACTGAGCAGGAGAAAGAT	0.363	13	41
BNIP1	662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	172587005	172587005	+	Silent	SNP	G	G	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	GGATCAGCAGGATGATGGCCC	0.562	108	158
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	90501843	90501843	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	TGGAGGGGTGGGAAAGCCCAC	0.572	22	21
PTX3	5806	broad.mit.edu;hgsc.bcm.edu	37	3	157154729	157154731	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	AGCAATGCATCTCCTTGCGATTC	0.493	64	96
