Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	5603797	5603797	+	Silent	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GGAAACGGTACGCGGAGCATA	0.602	40	133
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7050146	7050146	+	Silent	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	TGCTTCCTCACCCTCTGCACG	0.567	16	59
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	83379779	83379779	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	TCCAAGACTGACCACATCCCT	0.458	43	83
PTPN11	5781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	112915523	112915523	+	Missense_Mutation	SNP	A	A	G	rs28933386		TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	CATCAATGCAAATATCATCAT	0.378	15	56
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	81571959	81571959	+	Silent	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GCCTCCTTCCCTGTGCAGCCA	0.612	19	29
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61621618	61621618	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	AGATGCAGCCCCTCCCCTGAG	0.612	22	37
CD300A	11314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72473594	72473594	+	Silent	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GCTCCTCTCCCTGCTGGCATT	0.512	22	100
MAPK4	5596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	48190668	48190668	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	CGACCTGGCACGCCTGCTGGA	0.612	12	90
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1056395	1056395	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	CAACGCAATCCTCCGTGCTCA	0.612	28	81
AMPD2	271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	110168798	110168798	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GCCAGACATCCTGCTTCGGGC	0.632	12	52
FCRL3	115352	hgsc.bcm.edu;broad.mit.edu	37	1	157665876	157665876	+	Silent	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GGCTGTGAACGTTATCAGCTG	0.532	9	91
C20orf26	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	20271009	20271009	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	AACTCCCTTGGAGGTACAAAT	0.348	19	54
ACOT8	10005	hgsc.bcm.edu;broad.mit.edu	37	20	44472287	44472287	+	Silent	SNP	C	C	G			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GGTGAGGCAGCAGTGCAGTGC	0.597	18	58
ACVR2B	93	hgsc.bcm.edu;ucsc.edu	37	3	38518942	38518942	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	CATCGAGCTCGTGAAGAAGGG	0.612	4	34
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	94436513	94436513	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	ATCAACCGAAGCAATGGATCG	0.473	21	100
PDE4D	5144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	58489358	58489358	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	AAGTCATCTCCGTGTCTGAAA	0.398	8	31
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	90119413	90119413	+	Splice_Site	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	AACCAGAAAAGGTAAGAAATG	0.363	10	13
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	160061402	160061402	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GATGGTGCAACGTCGGAACAC	0.507	28	51
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu	37	6	30131720	30131720	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	CGAGGAGCACGGCGAGAAGAT	0.632	3	53
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	48506641	48506641	+	Splice_Site	SNP	C	C	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	AAACCCACGCCAGTAAGTGTC	0.473	30	133
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	87183111	87183111	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	TTCCCCTGAGAGGACCAAGGT	0.393	25	56
RNF208	727800	broad.mit.edu;ucsc.edu	37	9	140114928	140114928	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GCAGGTGCACGCGGCCCCACA	0.706	3	15
PCDHB1	29930	broad.mit.edu;ucsc.edu	37	5	140432731	140432731	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	AATGACAATCGTCCAATGATC	0.502	25	48
FCHO1	23149	broad.mit.edu;ucsc.edu	37	19	17895689	17895689	+	Silent	SNP	G	G	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	TGCTGCCTGTGGGGGAGCCTG	0.652	20	138
TAF1	6872	broad.mit.edu;ucsc.edu	37	X	70621406	70621406	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GGTGCCATTGGACACATGAGG	0.458	13	15
KRT20	54474	broad.mit.edu;ucsc.edu	37	17	39041184	39041184	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	CACCTTTTCTAGGTAGCTCGC	0.542	6	57
WDR78	79819	broad.mit.edu;hgsc.bcm.edu	37	1	67371036	67371037	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	CTAATAGACTTCTTTGGTTGTG	0.322	16	16
PHLDB2	90102	broad.mit.edu;hgsc.bcm.edu	37	3	111604041	111604042	+	Frame_Shift_Ins	INS	-	-	CAGA			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	TGCTGGAGAGTCAGACAGAGTT	0.515	23	81
NCOR2	9612	broad.mit.edu;hgsc.bcm.edu	37	12	124817682	124817683	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HT-7854-01A-11D-2253-08	TCGA-HT-7854-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	041fdd6c-8bbc-4966-8ca7-8a9099b9031f	c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829	GTACCTGGGCTCCGTCTGTTCC	0.644	32	86
