Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR51B2	79345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5345181	5345181	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	ATCATATGCCATTGCCAGGAG	0.458	9	87
SCGB2A2	4250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	62037739	62037739	+	Silent	SNP	C	C	T	rs137975337	byFrequency	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	AGCACTGCTACGCAGGTGAGT	0.592	97	113
OR10G3	26533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	22038134	22038134	+	Missense_Mutation	SNP	C	C	T	rs142649226	byFrequency	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	ACGGTGACCACGGTTACATGG	0.577	20	115
FBXO33	254170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	39870639	39870639	+	Silent	SNP	G	G	A	rs144987416		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CTTCACTCTTGATATCAAAAG	0.398	43	54
SLC28A2	9153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45561537	45561537	+	Splice_Site	SNP	T	T	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	TTCACTCAGGTCATCTGCTCC	0.478	32	122
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7578542	7578542	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	ATCTTGTTGAGGGCAGGGGAG	0.552	31	3
HID1	283987	hgsc.bcm.edu;ucsc.edu	37	17	72949151	72949151	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	GTGGACGGTCGCCGCTGCTCC	0.687	8	17
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	8620581	8620581	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CGGAGGTTGGCGGCAATGGCG	0.617	29	69
ICAM3	3385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10445307	10445307	+	Silent	SNP	A	A	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	TCTCGGTAGCATTTAGCTGAA	0.632	37	60
EID2B	126272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40023429	40023429	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CAACAGCCCAGTCGGCTCCGC	0.647	10	24
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152284999	152284999	+	Missense_Mutation	SNP	C	C	T	rs142483068	byFrequency	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CCCTGAACGTCGAGACCTTTC	0.567	149	410
ARHGEF2	9181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	155931587	155931587	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CGGTTGTAGATCTCCTGCAGA	0.607	44	49
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	158988254	158988254	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	ATCATCATATCAGATTATTTG	0.368	10	68
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	37469676	37469676	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CTGGAATGTGGCTCTGCAAAC	0.587	11	100
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	102984511	102984511	+	Silent	SNP	T	T	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	ACACAGGATCTTACTTTTTCC	0.403	14	149
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	TAAGCATGACGACCTATGATG	0.398	45	52
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	133654661	133654661	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CAGGCCCCTCGCCTCCCCAAG	0.602	4	30
RHOH	399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	40245505	40245505	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	TGAGTGCGCCGTCCGAACTGC	0.542	37	29
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu	37	5	1422122	1422122	+	Missense_Mutation	SNP	C	C	T	rs138948519		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	AGGTGCAGCACGCCACGTCTG	0.662	8	92
SLC12A2	6558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	127449952	127449952	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CATTAGATTGTCATGGATTGT	0.373	58	146
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	160199292	160199292	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	AGTTAAAGAACTTGGATTAAA	0.388	13	24
STK31	56164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	23871943	23871943	+	Nonsense_Mutation	SNP	T	T	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	TGGATAAATGTATGGAGAAGA	0.333	59	54
C12orf71	0	broad.mit.edu;ucsc.edu	37	12	27234398	27234398	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CCTGGCTTATCATCTGCCATG	0.463	40	63
IPO9	55705	broad.mit.edu;ucsc.edu	37	1	201817721	201817721	+	Splice_Site	SNP	A	A	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	GTGTGCTGACAGGTACCAGAA	0.512	18	27
BMP6	654	broad.mit.edu;ucsc.edu	37	6	7727731	7727731	+	Silent	SNP	G	G	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CCGCGCACCCGCTCAACCGCA	0.741	3	13
KIAA0556	23247	broad.mit.edu;ucsc.edu	37	16	27640072	27640072	+	Silent	SNP	T	T	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	ACGGTGCCAATTCGGAGCTGA	0.522	45	143
TCEB3	6924	broad.mit.edu;hgsc.bcm.edu	37	1	24077560	24077561	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	GAGATGAGAGAAAGAGGTGTCA	0.48	50	120
GBP2	2634	broad.mit.edu;hgsc.bcm.edu	37	1	89578261	89578263	+	In_Frame_Del	DEL	TCT	TCT	-	rs142287187		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CTGCTTGACATCTTCTTCTAAAG	0.438	40	190
UXS1	80146	broad.mit.edu;hgsc.bcm.edu	37	2	106710502	106710505	+	Frame_Shift_Del	DEL	CTTT	CTTT	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CGAGTCCGTCCTTTCTTTATTCTG	0.412	35	31
ZXDC	79364	broad.mit.edu;hgsc.bcm.edu	37	3	126191130	126191133	+	Frame_Shift_Del	DEL	ATAA	ATAA	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	ACTCACTGTGATAAATGTCTTCTC	0.475	44	77
YTHDC1	91746	broad.mit.edu;hgsc.bcm.edu	37	4	69203308	69203310	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CATCTGGCGTAGGAGATTTGGCC	0.404	21	37
ANK2	287	broad.mit.edu;hgsc.bcm.edu	37	4	114277079	114277080	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	GCCACAAAGACTCTCTGGAAGC	0.51	45	65
OR1J4	26219	broad.mit.edu;hgsc.bcm.edu	37	9	125281597	125281599	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CACCCCCATGTTCTTCTTCCTCA	0.498	133	173
CALCOCO1	57658	broad.mit.edu;hgsc.bcm.edu	37	12	54110173	54110175	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	AGTGATGGTTCTCCTGTTGTGCC	0.542	40	50
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu	37	19	11106926	11106928	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CTCATCGACCAGAAGAAGGACAA	0.576	42	159
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76918950	76918951	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	CTCCGTCACTCACAGTCAATTT	0.361	27	5
