Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	36049234	36049234	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GTCAGGATCTCTCTTGCCAGT	0.433	37	87
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	24787720	24787720	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	ATGACACCCCGGCTGTAGCAG	0.562	27	63
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	72172772	72172772	+	Silent	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	CCAAAGCCACGTTGCTAATCT	0.438	48	109
ALDH1A3	220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	101425495	101425495	+	Silent	SNP	C	C	T	rs58142816	byFrequency	TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	ATGAATGGCACGAATCCAAGA	0.348	20	46
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	69726213	69726213	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GTTATCTTCAGTTTTATTTTC	0.448	44	87
LPO	4025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56342147	56342147	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	TGGATACCCCCATATCAAGGC	0.478	35	49
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1481915	1481915	+	Missense_Mutation	SNP	C	C	T	rs145279692		TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GGCTGGGCAGCGGTGGTGGGG	0.711	9	17
ZNF256	10172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	58453810	58453810	+	Silent	SNP	T	T	C			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GTTTCCTACATGCCCCGTCTG	0.458	52	98
KLHDC7A	127707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	18809173	18809173	+	Silent	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	ACCCGCTCACGGGGATCTGGA	0.667	15	30
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	27440680	27440680	+	Silent	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GGGGTGTCTCGCCTACACCCT	0.617	32	42
CYP4B1	1580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	47279204	47279204	+	Silent	SNP	C	C	T	rs147120348		TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	ACATCTTCTGCGATGTGGGTC	0.582	31	39
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	82434955	82434955	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	CATCTTCACCTTCTGCTTTTT	0.393	47	131
ETV3	2117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	157105467	157105467	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	TGGGGATGACTCTGTTTTGTA	0.527	44	73
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	232538163	232538163	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	CTGGAGTTGTCGAAGAATTAA	0.393	25	31
SSTR4	6754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	23017075	23017075	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	CGACAACTTCCGCCGATTCTT	0.587	46	57
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	160050870	160050870	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	TGGCCACGAGGAAGTTGTCAC	0.552	26	48
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	ATAAGCATGACGACCTATGAT	0.393	21	62
FEV	54738	hgsc.bcm.edu;broad.mit.edu	37	2	219846970	219846970	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	AGCTGGATCTGTCCGCTGCCT	0.697	8	6
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	231150502	231150502	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GGTCTCCAGTGAAAAGAAGGC	0.458	58	93
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	85984926	85984926	+	Nonsense_Mutation	SNP	C	C	G			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GATACACCATCAGTTAAGATT	0.328	61	90
ALDH7A1	501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	125885898	125885898	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	CCAAGCCAGCGAAAGATTCTG	0.348	23	66
MRAP2	112609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	84799071	84799071	+	Silent	SNP	G	G	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GGCTCATGAAGTTTGACATCC	0.493	44	62
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	48335325	48335325	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	TCCTCGCCGAATCAGCTAAAT	0.393	45	96
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	72946552	72946552	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	CAACTGTAGACCTCAACAAAG	0.294	26	37
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	87443690	87443690	+	Silent	SNP	A	A	C			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	ACACAAAAACAACCCAGTGGG	0.348	24	79
PPP1R26	9858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	138379182	138379182	+	Silent	SNP	C	C	T			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	CCAGGAGCACCAGCGGCGGTG	0.652	63	55
A1CF	29974	broad.mit.edu;hgsc.bcm.edu	37	10	52596001	52596002	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	TCTCTTTTTGGTTTTTGGGATG	0.446	39	104
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7573996	7574003	+	Frame_Shift_Del	DEL	AGCTCTCG	AGCTCTCG	-	rs121912662		TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	GGCCTCATTCAGCTCTCGGAACATCTCG	0.562	16	10
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76938029	76938029	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HT-7873-01B-11D-2395-08	TCGA-HT-7873-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cc65ab63-a507-4dbf-becf-93fc7d1bea3d	b7ec26c5-3d2d-4164-9de2-7202c49e4429	TTAGGAAGTCGATCTCTTAAT	0.418	154	37
