Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	61835813	61835813	+	Missense_Mutation	SNP	G	G	A	rs148024054	byFrequency	TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TTTTAAGGGCGTAGCTTCCGT	0.473	54	24
HBD	3045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5255603	5255603	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	ACTGCATCCACGTTCACTTTG	0.507	24	42
OR5M1	390168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56380663	56380663	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	ATCACCAGGGCGATGAAGAGA	0.448	20	32
TUBA3C	7278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	19752430	19752430	+	Missense_Mutation	SNP	C	C	T	rs140107190		TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	ATCTCCTTGCCGATGGTGTAA	0.542	51	94
OR4N2	390429	hgsc.bcm.edu;ucsc.edu	37	14	20295845	20295845	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGTGGCTCCCCGGATGTTGGT	0.517	80	205
TMEM229B	161145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	67940541	67940541	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	AAGTTCACCACGAACTCCCAG	0.617	13	14
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu	37	14	75022287	75022287	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GGGGGCAGGGCGTTGGAAGAG	0.652	10	113
ESRRB	2103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	76905888	76905888	+	Silent	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGTTTGCAGGCGCCGGGCTGG	0.677	20	65
HS3ST6	64711	hgsc.bcm.edu;broad.mit.edu	37	16	1962140	1962140	+	Silent	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GGGCCTCTCGCGTCACGAAGT	0.672	17	23
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	69689703	69689703	+	Splice_Site	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGACACTGGCGTAAGTACTTA	0.353	17	27
TMEM99	147184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38991040	38991040	+	Nonsense_Mutation	SNP	T	T	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GGTCATCGGTTGAGAGAAGGA	0.458	79	100
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61557154	61557154	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CTGGCTTCCTCGCGAAGCTAC	0.602	35	62
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	29038477	29038477	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CGATCAGCCGCCTTTTGGAAT	0.443	18	34
ZNF560	147741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9578276	9578276	+	Silent	SNP	T	T	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CTCTCAAATGTCCAAAAAGAG	0.398	42	50
CRTC1	23373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	18888133	18888133	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GCTCAACGACCCCGACATGGT	0.682	176	325
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	23926730	23926730	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GTTAAAGGCTTTGCCACATTC	0.393	13	13
GPR32	2854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	51274118	51274118	+	Silent	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGGCCCTTGCCGATTTCATGC	0.562	26	48
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54778558	54778558	+	Silent	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CCAGGGTGGCGTAGATGCTGG	0.617	37	72
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54780127	54780127	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CAGAGGTTTTCTTCCTGGGCG	0.627	18	120
EMC1	23065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19563721	19563721	+	Silent	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TCAAGAACACCTGGATATACA	0.502	47	87
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	100361871	100361871	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGGTATTTTCCGCTGCTGGGG	0.373	31	48
OR2M7	391196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248487786	248487786	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	AGGACCAGAAAGAAGAGGAAG	0.502	115	136
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	57428501	57428501	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GCCCATCCCCGTCGAGAATGA	0.642	12	16
TEF	7008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	41791868	41791868	+	Silent	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	AGAAGGAGAACACAGCCCTGC	0.587	57	90
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	37594451	37594451	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CTTCACTGGTCTCCTCAAGAT	0.488	28	50
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238249144	238249144	+	Silent	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	AAGGCTCCTCGTTGAGCTCGG	0.557	38	49
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	19575087	19575087	+	Silent	SNP	C	C	T	rs151258565	by1000genomes	TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGCAAACAGGCGGGGCTGCTT	0.542	33	44
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	171330202	171330202	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	AGCATGCTGCGGTCATTTATG	0.493	7	56
QDPR	5860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	17513644	17513644	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	ACCAGCACCCGGCGCGCCTCG	0.756	22	23
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	65180375	65180375	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CTGTACCACTGGGTGGCGTAA	0.438	7	18
CSN3	1448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	71114862	71114862	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGTGCCTCGCACATATTATGC	0.448	29	34
BTC	685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	75673309	75673309	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TTTACCCAGAGTTTCCATTTC	0.353	7	13
PPEF2	5470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	76787356	76787356	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CGACTCAGTTGTTCCTTGGCC	0.493	73	95
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	35692734	35692734	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	AGCATTTCATGACAATGAAAA	0.343	27	34
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	150948306	150948306	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGTGGCTCCGCGAGGTAGATG	0.493	56	106
CCDC170	80129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	151914325	151914325	+	Silent	SNP	C	C	T	rs113968720		TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGCGGCTGGACGTGGTTTTAG	0.453	25	36
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu	37	7	5372548	5372548	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GTCGGGACCGCGGGCGCCAGG	0.751	6	24
VWC2	375567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	49842318	49842318	+	Silent	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGTCTCCATGCGAGAGGTGTC	0.507	38	200
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	51097053	51097053	+	Silent	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CTTGAAGTGGCGCCAGGGAGT	0.552	19	64
ZNF679	168417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	63726330	63726330	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	AAAAGATTCACTCCAAAAAGT	0.378	8	20
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	12957837	12957837	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GCTCTCCATCCGTTTCAGCAG	0.562	107	93
RRAGA	10670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	19049841	19049841	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GAACCTGTGGGACTGTGGCGG	0.542	17	8
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35560371	35560371	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	gaggaagaagaggagacagaa	0.682	25	38
OR13C3	138803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	107298219	107298219	+	Silent	SNP	C	C	T	rs145221004		TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CTTGAGACTTCGGTTTCGCAT	0.438	39	70
MAGEB16	139604	hgsc.bcm.edu;broad.mit.edu	37	X	35821247	35821247	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	GTATGCGGAAGCTCTGAAAGA	0.488	5	1
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	123179197	123179197	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CAGAGCATTTCGACATACAAG	0.343	46	18
RAP1GDS1	5910	broad.mit.edu;ucsc.edu	37	4	99300314	99300314	+	Splice_Site	SNP	G	G	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CAATGAGAATGGTAAACAAAA	0.333	23	52
DOCK8	81704	broad.mit.edu;ucsc.edu	37	9	463659	463659	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	ACTGTACAAGCCAATATTCAG	0.478	4	32
CREBBP	1387	broad.mit.edu;hgsc.bcm.edu	37	16	3828795	3828795	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TGCGGGATCAGGTGTTGGGAA	0.468	46	86
TCF12	6938	broad.mit.edu	37	15	57554314	57554315	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	CGGGAAGACTCTGTCAGTCTCA	0.351	6	10
PTEN	5728	broad.mit.edu	37	10	89685307	89685307	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8011-01A-11D-2395-08	TCGA-HT-8011-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bbe11ade-61db-4377-80b8-085c8a012162	8f7801c3-5cc4-41ac-a7db-4969f6ea56b7	TTACAAGATATACAATCTGTA	0.274	2	2
