Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	79601943	79601943	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	ATGGTGGATCGCCTCAAACCT	0.652	58	69
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	657235	657235	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	TGCACAAGCAGAATGAGGAGG	0.622	21	29
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	665815	665815	+	Silent	SNP	C	C	T	rs150429681	byFrequency	TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	AAGGCCAGCGCGTGGTGCGGC	0.622	38	60
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	25399896	25399896	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	ATTTGGTACCGAGCAAAAGTT	0.378	21	89
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu	37	14	101005290	101005290	+	Silent	SNP	C	C	T			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	CCTCCTCGGCCGCGCTGTCAG	0.726	11	31
CLUH	23277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	2595751	2595751	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	CTCCATCACCCCGTGCAGCAC	0.701	11	63
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	80051592	80051592	+	Silent	SNP	G	G	A			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	TCTCAGAGCCGCTCACGCCCA	0.657	41	68
OMA1	115209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	58999969	58999969	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	GGCATCTTTCTCAGTTAGCAT	0.338	19	4
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu	37	1	156841489	156841489	+	Silent	SNP	G	G	A			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	AGAACGTGACGTGCTGGGCAG	0.592	9	114
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	102959762	102959762	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	CTAGACATGGTTTTAAGAATA	0.453	45	139
TFCP2L1	29842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	122005806	122005806	+	Silent	SNP	G	G	A			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	GCTGGGTCGGGCTGGCCCTGG	0.527	4	38
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	ATAAGCATGACGACCTATGAT	0.393	30	37
MSMO1	6307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	166263064	166263064	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	GCCTATAATGAAAAGAGGAAG	0.343	24	28
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	27310644	27310644	+	Silent	SNP	G	G	A			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	AGTTCACAGGGCCCCCACAGA	0.542	40	65
ARR3	407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	69500075	69500075	+	Silent	SNP	G	G	T			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	AAGAGCTGCTGGGGATCCTGG	0.502	51	93
CTAG2	30848	hgsc.bcm.edu;broad.mit.edu	37	X	153881577	153881577	+	Silent	SNP	C	C	T	rs140132753		TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	TTCCATCCTGCGCAGAAGCGG	0.711	19	59
POLR3K	51728	broad.mit.edu;ucsc.edu	37	16	97470	97470	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	ATTGCAGCACTTGTAGAAGGT	0.557	45	63
PMPCB	9512	broad.mit.edu;hgsc.bcm.edu	37	7	102948108	102948109	+	Frame_Shift_Del	DEL	AA	AA	-	rs141254128		TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	ATGCACACACAAAGGAGAAATA	0.396	10	41
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42793215	42793218	+	Frame_Shift_Del	DEL	CAGT	CAGT	-			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	GAGAAGTAGACAGTCAGGCGCTAC	0.667	28	59
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42796554	42796555	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	CCACGAGCTCTGTAGCTCTAGG	0.703	11	46
MYH7B	57644	broad.mit.edu;hgsc.bcm.edu	37	20	33583356	33583358	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	AAAGCTGAGAAGGAGAAGCAAGC	0.645	19	28
NOTCH1	4851	broad.mit.edu	37	9	139413070	139413072	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	CACTCGCAGTAGAAGGAGGCCAC	0.655	8	43
CIC	23152	broad.mit.edu	37	19	42791207	42791208	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-HT-8012-01A-11D-2395-08	TCGA-HT-8012-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1731d809-8fde-4539-82ab-4cdf461abb88	c2b420d7-bb63-411d-979d-d5b9bd30ebc3	CAGGTGGGACAGGGAGTGCTGA	0.649	8	102
