Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ZNF438	220929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	31134429	31134429	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TGACAACGACCACATTTGATT	0.393	29	63
ZNF215	7762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	6977476	6977476	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	ACAAACCTTACTAAGCATCAA	0.408	7	32
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu	37	11	113856763	113856763	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	CTCTTTGTGGCGCTTGCCAGA	0.527	16	306
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	62986483	62986483	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	CCTTTTAAGGATTTCATGCAG	0.393	28	45
SETD3	84193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	99865219	99865219	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	CCAGCCTCCTCCTCGAGGTTT	0.532	70	98
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	23703565	23703565	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TTTGCCTGGCGATAAAGACTG	0.612	55	78
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	3100860	3100860	+	Silent	SNP	A	A	G			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TTCTCCTGGGAGTTACTAGTC	0.398	57	70
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu	37	17	6526324	6526324	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	GCAGGAAGTGGATGCTCCCCT	0.522	4	63
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	GCACAAACACGCACCTCAAAG	0.542	10	13
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577545	7577545	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	CTCCGGTTCATGCCGCCCATG	0.577	30	56
SLC25A52	147407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	29340011	29340011	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	ACTGTGAGTCGTTGCGGTAGG	0.453	8	66
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	62728946	62728946	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	GCTGGAGACGCGGAACCACTC	0.562	17	14
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	237730050	237730050	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TCAGATGAACGTGCCTTTGCC	0.527	96	137
DBNDD2	55861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	44037441	44037441	+	Splice_Site	SNP	C	C	A			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TGATCCGCAGCCCCCATAGGT	0.517	17	21
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu	37	2	107041183	107041183	+	Silent	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TCCCCAAGCCCCTTTCTTTCC	0.378	199	315
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179443923	179443923	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TTTTGGCAATCGTACACTATA	0.443	42	56
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	ATAAGCATGACGACCTATGAT	0.393	34	37
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	121158888	121158888	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	CAAATATCTACGCCTTCCCAA	0.328	19	32
ESYT3	83850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	138192428	138192428	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	CTCACAGTGCGCTATGTGTGT	0.562	65	99
SMIM19	114926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	42401645	42401645	+	Silent	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TGATGGGTGACGATGGTTCTA	0.433	43	113
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	94745679	94745679	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TGGCCTATCATTTAGATCTTT	0.378	23	31
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu	37	X	54784549	54784549	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	GACCTTGGGCACCAAGGCTGG	0.532	6	73
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76939235	76939235	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TTGGCAGGTTCATATTGAGGT	0.383	123	184
PGK1	5230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	77380495	77380495	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	GGAACCAAAGCTCTCATGGAT	0.493	12	71
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	149638129	149638129	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	ACCCTTGCAATGGGCCCAGGT	0.517	18	144
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	155234153	155234153	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	GACCTGGAGCATCAGTCCTGC	0.547	10	77
STK32C	282974	broad.mit.edu;ucsc.edu	37	10	134021578	134021578	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TTCCGCCTCGTCCTCCACAGG	0.706	3	32
CNTNAP2	26047	broad.mit.edu;hgsc.bcm.edu	37	7	146829342	146829342	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HT-8013-01A-11D-2395-08	TCGA-HT-8013-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	590efe82-cb5a-4e5e-943c-a8ebb1033776	da88f82c-7da0-4aec-97b0-11132dfb0ebb	TACAGGGAAATTTGAGCTTTT	0.428	64	53
