Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CSGALNACT2	55454	hgsc.bcm.edu;ucsc.edu	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	byFrequency	TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TAATCGTGGACGAGGACTAAA	0.408	5	39
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	89624301	89624301	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	ACTTAGACTTGACCTGTATCC	0.458	38	31
OVCH1	341350	hgsc.bcm.edu;ucsc.edu	37	12	29642562	29642562	+	Silent	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CCTGGCAGGCGTCCATTCCCC	0.493	5	11
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	72893328	72893328	+	Silent	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TGCTGCTGGACGGTTTGGCCA	0.458	35	56
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	108589925	108589925	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CAAGCTTGGCGACTACGGTGG	0.607	32	54
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	24793338	24793338	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CAGTCCTGGTCGTGTGGCCAC	0.622	19	47
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	74315324	74315324	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CAGGATAGTGCCTTTGGCGCG	0.687	14	21
ASB7	140460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	101170214	101170214	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TGGAAGTAGTCGACCATGTTT	0.358	30	48
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	1568282	1568282	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CCGATGCGGATGGTGCTGTCC	0.602	20	42
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	21049263	21049263	+	Silent	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	ACAGTTGTTCCGAGCACAGGC	0.547	17	33
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	56396893	56396893	+	Silent	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GGGTCACGGGGTCAGAGGACG	0.567	31	17
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10223518	10223518	+	Silent	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GGACTTGTTCGTCATCTATTT	0.388	7	12
RNASEH2A	10535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	12920991	12920991	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCCCTCTACCCGGTGGTTAGT	0.582	35	115
CYP2S1	29785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	41703792	41703792	+	Missense_Mutation	SNP	C	C	T	rs148695011		TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CTGATCCAGGCGGAGGCCCGG	0.622	10	44
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	53668011	53668011	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	ACACTAAATGCTTTGCCGCAC	0.398	25	168
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56321356	56321356	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCCGTCAGGCCAGTCCTTGGC	0.498	45	74
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	26691676	26691676	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GTGAATTTCTTGTCATCGGTG	0.577	5	13
C8A	731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	57378109	57378109	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCGGCACACAAGCCTGGGGCC	0.602	39	79
RPF1	80135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	84961976	84961976	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	ACTTGGACCACGTTTTACCTT	0.328	34	44
FASLG	356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	172628551	172628551	+	Silent	SNP	C	C	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	cgctgccaccCCTGAAGAAGA	0.617	11	20
OR2G6	391211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248685544	248685544	+	Silent	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	AGGCAGAACTCTTTGTGGCCA	0.473	29	72
AHCY	191	hgsc.bcm.edu;broad.mit.edu	37	20	32873405	32873405	+	Silent	SNP	G	G	A	rs139344907	byFrequency	TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CCAGCAGGATGATGCGGCGCC	0.632	9	145
TRPM2	7226	hgsc.bcm.edu;ucsc.edu	37	21	45846577	45846577	+	Missense_Mutation	SNP	C	C	T	rs113563173	byFrequency	TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CCCTTTTACACGGCAGAGAGG	0.602	21	133
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	32858959	32858959	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GTTGATATTTCTACTTGGTGT	0.368	22	103
EPC2	26122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	149528637	149528637	+	Silent	SNP	A	A	G			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GAATATCCACAGAACATGACC	0.383	18	24
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	198267364	198267364	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	ACAATCTTAATACCAGTGTGT	0.408	13	72
IQCA1	79781	hgsc.bcm.edu;broad.mit.edu	37	2	237308067	237308067	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TTTGTATGCGTTACATCCTTC	0.463	6	121
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238274357	238274357	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCTGTCCGGCGAGGACTGTCT	0.552	36	56
GRK7	131890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	141497220	141497220	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	AGAGCTGCAGCGGCGGCGGCG	0.682	18	48
KIAA0232	9778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	6865324	6865324	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	AGTTTTAAACCGAAATCAATC	0.418	38	109
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	46995377	46995377	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCACAGGAAGCGCAGGAGGGC	0.592	61	100
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	55961110	55961110	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TGACGGAATCGTGCCCCTTTG	0.433	34	64
GZMK	3003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	54329739	54329739	+	Silent	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	ACCTTGTCCCGCCTCATACAA	0.408	18	57
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	89954001	89954001	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GGAGGAGCTCGTATTTCGGAA	0.348	38	85
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	150924339	150924339	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GGGTCAATTCGGAAATATGTG	0.428	62	144
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	158158158	158158158	+	Silent	SNP	G	G	A	rs146276323		TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TGGTGGGTTCGTTGAGCGCTG	0.448	10	33
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	170738554	170738554	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	AATCTGCAGCCCTGGGAGGAG	0.637	13	17
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	142397176	142397176	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CAGGCGTTTCCGTGTTTCCAT	0.378	24	50
EGFR	1956	hgsc.bcm.edu;broad.mit.edu	37	7	55241722	55241722	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CGGTGCGTTCGGCACGGTGTA	0.562	126	1990
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	55534023	55534023	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GACCCGAAGACGAGGCGTGCG	0.642	49	108
PARP10	84875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	145057683	145057683	+	Missense_Mutation	SNP	G	G	A	rs146697146	byFrequency	TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCCTCCAACGGGGGCTGCTCC	0.677	6	23
AKAP17A	8227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	1720261	1720261	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CGCAAGGAGCGGCGGCCCCAC	0.731	4	18
APEX2	27301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	55033742	55033742	+	Silent	SNP	G	G	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	AGCCATGTGTGATGCGTACTG	0.622	21	40
ZMYM3	9203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70464671	70464671	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GTCTTGTTCAGTAGACACATC	0.478	8	30
RPS4X	6191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	71493768	71493768	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TGAGTCACCAGATGAGGGATT	0.438	24	55
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	83129576	83129576	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CATCACCAAAGGTCAGACGTC	0.433	35	53
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	88009269	88009269	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GGAAGGCTTTTTAACACTTAC	0.303	30	47
NKRF	55922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	118724016	118724016	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	AACTGAGCTGTGTCGTTCAGC	0.428	52	140
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	129147463	129147463	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCTTGTTCCAGTCCAAGTTGC	0.637	92	185
SLC25A14	9016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	129498601	129498601	+	Splice_Site	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GTGTTTCGTAGGGTGTGGTTC	0.408	41	99
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	130415782	130415782	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CTGAGAATTTTTGGAATGTTT	0.453	41	53
SPEF2	79925	broad.mit.edu;ucsc.edu	37	5	35646854	35646854	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCATCAAATCGTACTTTGAAA	0.333	41	83
THSD7B	80731	broad.mit.edu;ucsc.edu	37	2	138378230	138378230	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GGTGGAATGCGTGGTCAACTG	0.468	63	114
MKNK2	2872	broad.mit.edu;ucsc.edu	37	19	2043519	2043519	+	Silent	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CCTGGCACTGGTACAGCATCT	0.587	20	62
CYP1A2	1544	broad.mit.edu;ucsc.edu	37	15	75042332	75042332	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CTCCACGCCCGTGCTGGTGCT	0.667	30	58
LRP2	4036	broad.mit.edu;ucsc.edu	37	2	170038807	170038807	+	Missense_Mutation	SNP	G	G	A	rs144973875		TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CCATCCAGGCGGGCATCCAAC	0.502	29	108
MUC6	4588	broad.mit.edu;ucsc.edu	37	11	1026378	1026378	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GGAGACCCCCGAGAACTCACA	0.652	17	24
IGSF1	3547	broad.mit.edu;ucsc.edu	37	X	130413285	130413285	+	Silent	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GCATGGTGACCCCTTGAGCTG	0.617	27	58
ADAMTS12	81792	broad.mit.edu;ucsc.edu	37	5	33683148	33683148	+	Missense_Mutation	SNP	C	C	T	rs61754760		TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TAGAATGAGCCGAACCACAAC	0.433	21	53
FAM71B	153745	broad.mit.edu;ucsc.edu	37	5	156590151	156590151	+	Silent	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TGCCTGCAAACGCCGCACTCA	0.582	22	55
LNX1	84708	broad.mit.edu;ucsc.edu	37	4	54327127	54327127	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CTTCCTTTAAGTTCTTTCAGC	0.343	33	54
AC005307.3	0	broad.mit.edu;ucsc.edu	37	19	29215151	29215151	+	RNA	SNP	G	G	A	rs151046529	by1000genomes	TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CAGACTGTCCGCCATCCAGAT	0.443	10	41
CACNA2D4	93589	broad.mit.edu;ucsc.edu	37	12	1995491	1995491	+	Silent	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	TGCCGCTCACGTCCACCAAAA	0.488	29	42
ATP1A2	477	broad.mit.edu;ucsc.edu	37	1	160099056	160099056	+	Splice_Site	SNP	C	C	T			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CTTCTGGCAGCGGGACACAGC	0.557	87	173
RIPK4	54101	broad.mit.edu;ucsc.edu	37	21	43161012	43161012	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	GTCTTGCTTCGCCGCAGGAGC	0.672	17	42
EGFR	1956	broad.mit.edu	37	7	55260473	55260473	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8104-01A-11D-2395-08	TCGA-HT-8104-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42c28a52-8073-48ea-9d4b-48ecea6c5c22	e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09	CTATCAAGTGGATGGCATTGG	0.433	44	1857
