Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OGDHL	55753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	50953529	50953529	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GTGGCCACGCCGGCGGTAACA	0.572	28	80
ADK	132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	76360239	76360239	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	AGATGACACTATAATGGCTAC	0.348	9	34
FFAR4	338557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	95326548	95326548	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	AACCGCACCCGCTTTCCCTTC	0.701	6	41
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	100013489	100013489	+	Silent	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GCTGGCTGAGCGGGCGGTCCT	0.627	25	52
ADRBK1	156	hgsc.bcm.edu;broad.mit.edu	37	11	67046685	67046685	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CCTGCTCTTCCGAGACTTCTG	0.592	6	77
TAPBPL	55080	hgsc.bcm.edu;broad.mit.edu	37	12	6567822	6567822	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	TTCCCCTAAAGTACGACTGAG	0.522	12	156
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu	37	12	14634097	14634097	+	Silent	SNP	T	T	C			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CTCCTGCTGTTCGGCAGGTCA	0.453	8	139
FLT3	2322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	28609684	28609684	+	Silent	SNP	A	A	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	AATTGTATGCACAGCACTTGA	0.438	18	163
FLT3	2322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	28611413	28611413	+	Silent	SNP	A	A	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	TATGATTGCAAAACTTGGATA	0.378	10	79
SDR39U1	56948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	24909494	24909494	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GGCAAACTCAGCATTAGTGGC	0.617	21	39
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45398797	45398797	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CTTGTGTTCTCGGCCCCGGAA	0.557	33	176
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	63972937	63972937	+	Silent	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CTCCAACACACGTGCCTTCAT	0.373	25	194
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	72190411	72190411	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CTCTGTATTCAAAGAAGGAAC	0.393	11	123
GDPD1	284161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	57348316	57348316	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	ACCACACACCATGTCCAGAAG	0.279	37	92
SMARCD2	6603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61911645	61911645	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CGTGTGCACTCCCAGCAGCCT	0.567	7	25
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11135091	11135091	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GCTGCTGACTGATGGCTCCGA	0.627	18	37
ZNF490	57474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	12692359	12692359	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	TTCAGTGTGAGATCTCATGTG	0.443	72	138
IL27RA	9466	hgsc.bcm.edu;broad.mit.edu	37	19	14157294	14157294	+	Silent	SNP	G	G	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CTGGGAGCACGGAGCTACTGG	0.627	15	216
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	23927189	23927189	+	Missense_Mutation	SNP	T	T	C	rs145416258	byFrequency	TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CTCTCCAGTATGAATTATCTT	0.398	30	62
THEMIS2	9473	hgsc.bcm.edu;broad.mit.edu	37	1	28209255	28209255	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CTCCTTCCTGGGCCTGCGGCT	0.602	6	91
KCNA10	3744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	111060317	111060317	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	AGTGTTTGCCCGAGGATCTGC	0.557	76	62
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu	37	1	167096396	167096396	+	Silent	SNP	G	G	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GGGACACGACGTCAGTACTGA	0.637	5	49
PRG4	10216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186276487	186276487	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CAAGTCTGCACCCACCACTCC	0.642	49	104
OR13G1	441933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	247835570	247835570	+	Silent	SNP	G	G	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	TGGAAGCAGGGCGGATATAGG	0.463	29	157
HELZ2	85441	hgsc.bcm.edu;ucsc.edu	37	20	62194934	62194934	+	Silent	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	AGCCCGCCTCCACGTCCACCA	0.711	4	10
FBLN7	129804	hgsc.bcm.edu;broad.mit.edu	37	2	112944825	112944825	+	Silent	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CCATCACGCTCTTCCGCATGG	0.647	17	190
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	ATAAGCATGACGACCTATGAT	0.393	31	81
ASIC5	51802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	156764859	156764859	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GTTACCCTTGCGTGCATTCCC	0.448	35	120
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu	37	5	13919350	13919350	+	Silent	SNP	A	A	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GGGCTTTTCAATTGTTCCAAA	0.507	29	234
ATP6AP1L	92270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	81608458	81608458	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CAACAAGTTGTCCATCCAGAG	0.413	17	221
HTR4	3360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	147889456	147889456	+	Nonsense_Mutation	SNP	G	G	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CATAGATGCGGTAATAGGCCA	0.542	23	41
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	167674102	167674102	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	AAGATGGTCAACCTCCAAAGT	0.522	65	126
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	54735129	54735129	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GGAATGGTATCGAGTAGCCAT	0.403	63	148
TACC1	6867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	38678119	38678119	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	TGAAATCTTAGAATCACCCAA	0.453	107	236
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	34257924	34257924	+	Missense_Mutation	SNP	G	G	A	rs144983593		TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CCAGATGTCCGATTTCGACTG	0.398	126	62
FAM120A	23196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	96324505	96324505	+	Silent	SNP	T	T	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	CAAGAGGAGTTATTTCCACCC	0.368	18	51
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	136029281	136029281	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	ACACGCCTGCGCTCATAGGGG	0.602	47	106
DDIT3	1649	broad.mit.edu;ucsc.edu	37	12	57911132	57911132	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	TCATACCAGGCTTCCAGCTCC	0.493	21	39
ZNF271	10778	broad.mit.edu;ucsc.edu	37	18	32887852	32887852	+	RNA	SNP	G	G	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	GAATGCTGTTGATTATTGATG	0.373	15	31
ARID4B	51742	broad.mit.edu;hgsc.bcm.edu	37	1	235345238	235345244	+	Frame_Shift_Del	DEL	TCTTCAA	TCTTCAA	-			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	TACTGTTTTTTCTTCAATGGGTTTACT	0.444	53	82
