Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	30318651	30318651	+	Silent	SNP	G	G	A			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	GCAGGCTGTGGGCTTGGGCCA	0.572	38	256
NRAP	4892	hgsc.bcm.edu;broad.mit.edu	37	10	115380379	115380379	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	AATGAGTTCTCCTGCCTTCTT	0.498	9	109
EIF3A	8661	hgsc.bcm.edu;broad.mit.edu	37	10	120802275	120802275	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	CTTCTCCACGTCTCCACTCCC	0.423	9	158
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu	37	11	56310625	56310625	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	AGCAGGGTGACGAGGTAAACA	0.473	6	109
ZFPL1	7542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	64855417	64855417	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	GCTGGGTCTCGGAAGCGGCCG	0.697	13	85
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	121358800	121358800	+	Silent	SNP	T	T	A			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	TCTGCAACACTCTTCAAGGCT	0.517	64	292
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	109690903	109690903	+	Silent	SNP	C	C	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	CCCACATCACCGTGCCAGATG	0.512	33	263
LATS2	26524	hgsc.bcm.edu;broad.mit.edu	37	13	21557659	21557659	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	GTAGAGTTTGACCACCCACTC	0.537	13	189
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	ATGGGCGTGCCTGCCAATGGT	0.632	15	71
TMEM199	147007	hgsc.bcm.edu;ucsc.edu	37	17	26685983	26685983	+	Missense_Mutation	SNP	T	T	C	rs35276012	byFrequency	TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	CAGTGAAATCTATCTCCCAGA	0.433	6	69
ZNF177	7730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9492389	9492389	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	GAAAAAGCCTTTAGCACAAGC	0.448	32	163
KCNK6	9424	hgsc.bcm.edu;broad.mit.edu	37	19	38817239	38817239	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	CTAGGCTATGGGTACACAACG	0.572	8	150
AURKAIP1	54998	hgsc.bcm.edu;broad.mit.edu	37	1	1309600	1309600	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	AGCCACAGTCCCTGCGGTCCC	0.657	7	70
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	50723230	50723230	+	Nonsense_Mutation	SNP	G	G	C			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	CGTAATGTAAGTACCTGGGAA	0.353	4	11
MRPS5	64969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	95773974	95773974	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	CATGAGTTTCCACTCCATCCT	0.532	16	100
GYG1	2992	hgsc.bcm.edu;broad.mit.edu	37	3	148744693	148744693	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	ACAACATCAAGAGGAAACTTG	0.458	8	112
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	35707097	35707097	+	Silent	SNP	T	T	C			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	TTTGTGCTTGTGGAAGGGTAC	0.458	30	122
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	54335536	54335536	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	ACCAATGACACTCTTAGCAAA	0.413	16	53
TLR6	10333	broad.mit.edu;ucsc.edu	37	4	38829218	38829218	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	CCTGGCCCTGCGCCGAGTCTG	0.502	22	111
ARMC5	79798	broad.mit.edu;ucsc.edu	37	16	31470908	31470908	+	Silent	SNP	G	G	A			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	AGCTCGCGGCGGCGGCCGGGG	0.711	3	18
OTOGL	283310	broad.mit.edu;ucsc.edu	37	12	80749688	80749688	+	Silent	SNP	C	C	T			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	TTGTCATGGGCATCATTGATA	0.393	23	194
N4BP2	55728	broad.mit.edu;hgsc.bcm.edu	37	4	40104251	40104252	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HT-8113-01A-11D-2395-08	TCGA-HT-8113-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e19353f-7e6b-4f4c-bcf4-6cfa746e6f2d	fcc61745-3e32-4bb2-843c-73edb053d9cf	GTAGCAGTCTCAATCAAAAACA	0.411	12	51
