Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	93749186	93749186	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CTCAGTGCATAGCTAAACTCC	0.388	30	47
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	6654108	6654108	+	Missense_Mutation	SNP	G	G	A	rs139750490		TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	ACACGCACCCGAGCTACAGCG	0.597	7	41
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	18739488	18739488	+	Silent	SNP	G	G	A			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CCAGCACTGTGAGCTCTGCAC	0.542	16	84
STRAP	11171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	16050900	16050900	+	Silent	SNP	C	C	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	TTGTTGCAGGCGGTGAAGATT	0.343	19	42
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	67663410	67663410	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	AAGATGCGCTCTAAGAAAGAA	0.448	8	59
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	GCACAAACACGCACCTCAAAG	0.542	24	7
KRI1	65095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10670353	10670353	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	ACGGCGCACGGAGGACGCGAT	0.622	14	52
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56459540	56459540	+	Missense_Mutation	SNP	G	G	A	rs149738419		TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	TTGATAGAGCGTTTCCCTGGA	0.512	14	29
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu	37	1	150131105	150131105	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	TGTGCTGAGAGCTTTCGGGTT	0.617	7	95
SCTR	6344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	120197767	120197767	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CTGAAGGAGGCCACGGGGTGC	0.637	12	29
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	208866024	208866024	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	AAGGTTGATGCTTCCTTTTGT	0.453	18	94
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	ATAAGCATGACGACCTATGAT	0.393	14	35
LHFPL4	375323	hgsc.bcm.edu;broad.mit.edu	37	3	9594261	9594261	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	ACGTTGATGATGGCGAAGCAG	0.632	5	74
ADPRH	141	hgsc.bcm.edu;broad.mit.edu	37	3	119305222	119305222	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	GGCGGCTGTGGGGCTGCCATG	0.612	9	159
TFRC	7037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	195803944	195803944	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CCAAGTTAGAGAATGCTGATC	0.343	16	44
HARS	3035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140070858	140070858	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CTGAAGTTTCACCAGCTCCTC	0.652	12	35
PRSS35	167681	hgsc.bcm.edu;broad.mit.edu	37	6	84233254	84233254	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	GTGGCACTTGAGAAAGGTACC	0.448	10	113
FBXO30	84085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	146126348	146126348	+	Silent	SNP	A	A	G			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CCTTTGGTTTAGACCAACATG	0.388	51	91
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	110100140	110100140	+	Silent	SNP	C	C	G			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CCATCAAAGCCCAGTTTCTCT	0.413	22	34
RORB	6096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	77277523	77277523	+	Splice_Site	SNP	G	G	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CTGAAGTCAGGTAAGCAAGAA	0.458	15	80
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	31747794	31747794	+	Silent	SNP	T	T	C			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	TGGTCTTGTTTTTCAAATTTT	0.413	48	91
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76937081	76937081	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	ATTTTCTGTTCATCGCTGCTT	0.343	18	60
NUCB1	4924	broad.mit.edu;ucsc.edu	37	19	49422370	49422370	+	Silent	SNP	G	G	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	GGGAGCATGTGATGAAGAATG	0.622	4	42
PRSS3P2	154754	broad.mit.edu;ucsc.edu	37	7	142480060	142480060	+	RNA	SNP	C	C	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	CAGGTCACTGCTACAAGCCGT	0.567	23	104
SKIV2L2	23517	broad.mit.edu;ucsc.edu	37	5	54720585	54720585	+	Silent	SNP	C	C	T			TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	TGTTTGCTGCCAGCCTCTACT	0.378	4	41
TERT	7015	broad.mit.edu;ucsc.edu	37	5	1264587	1264587	+	Silent	SNP	G	G	A	rs34528119		TCGA-HT-A5R5-01A-11D-A289-08	TCGA-HT-A5R5-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0686504d-9d1a-470d-bb1a-14fef0939d3f	c54b6c79-a24e-418f-a5f3-5bda53aebf79	GGAATAGGCCGTGGGCCGGCA	0.627	20	44
