Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	88231975	88231975	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CTAAGGCAACGTGTGTTTAGA	0.333	19	7
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	89692877	89692877	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TCATGTTGCAGCAATTCACTG	0.393	58	29
TNNT3	7140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	1956135	1956135	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GAAGCTGAAACGCCAGAAATA	0.612	99	133
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	4903765	4903765	+	Silent	SNP	C	C	T	rs138268565		TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ATGGCACTGACGTATTGTTTA	0.443	39	53
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	78369775	78369775	+	Silent	SNP	T	T	C			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AGCTGGTGATTGTGGAGCCAT	0.537	48	53
SLC6A12	6539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	311930	311930	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TTGTTGCAGGTCGTCCAGGGC	0.517	36	53
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49937975	49937975	+	Silent	SNP	G	G	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GGGCCCATCTGCTGAAGACGG	0.701	11	16
ACADS	35	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	121176678	121176678	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CTGACCTGGCGCGCTGCCATG	0.642	58	86
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	34263138	34263138	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AAAGTACTATCGCTGGATGCA	0.373	26	41
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	1552359	1552359	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GCAGCCCTGCGGGCCCTTGAG	0.667	17	14
CES4A	283848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	67034837	67034837	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TGGCCGCCCGCGAGAAAGTGG	0.647	19	39
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7637984	7637984	+	Silent	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TTGCCAAGTCGTCCTACTTGG	0.522	36	56
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	8216517	8216517	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCACCATTTTCGGGGACCCCC	0.592	36	62
KIF2B	84643	hgsc.bcm.edu;ucsc.edu	37	17	51900500	51900500	+	Missense_Mutation	SNP	C	C	T	rs138727670	byFrequency	TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GGCGATCCAGCGCAGTGACAA	0.542	40	60
SEC11C	90701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	56823020	56823020	+	Missense_Mutation	SNP	G	G	A	rs115898236	by1000genomes	TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AAAGAAGGACGTGGTGGGAAG	0.363	29	50
TUBB4A	10382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6495759	6495759	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GCCAGCTTGCGCAGGTCGGCG	0.682	47	143
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	35831915	35831915	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ACCCCATGGCGCCTGGGAGGA	0.542	35	101
ZNF331	55422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54081063	54081063	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TACAGAATGTGGGAAGAGCTT	0.473	18	56
PLEKHN1	84069	hgsc.bcm.edu;broad.mit.edu	37	1	906524	906524	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ACGGCGTCAGGGCACGAACCC	0.692	12	11
HSPB7	27129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	16343699	16343699	+	Missense_Mutation	SNP	C	C	T	rs143274675		TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCCACCGGGGCGGGCTGTGGG	0.627	90	142
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	22176934	22176934	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ACTCGGCACACGTACTCGCCC	0.657	10	19
PTPRU	10076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	29611340	29611340	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TTGCTGTCCTCATCCTTCTCC	0.617	42	67
MKNK1	8569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	47024299	47024299	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CTGGGCCAGGGCCCGTCTCCG	0.622	20	43
C8B	732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	57411659	57411659	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AACTCGTAATGGAGCATGAGG	0.468	32	46
PFKFB2	5208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	207252343	207252343	+	Silent	SNP	G	G	A	rs144692490		TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCTCCGCAGCGTCCCTCATGT	0.552	82	106
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	34911630	34911630	+	Splice_Site	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ATTGTTCTGTCTGTAAAGCAG	0.438	43	104
ZBTB21	49854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	43413378	43413378	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AACAGGTGGCCGTGGTCTCTT	0.428	23	48
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	33525560	33525560	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GTAAACGGGCAGTGCAAAAAT	0.473	57	65
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	230923895	230923895	+	Silent	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GCCATTCCACGTTGAGGACAC	0.562	57	50
CD200R1L	344807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	112546321	112546321	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CTGAAGGTCCGAATTCTGATC	0.463	49	66
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	195488980	195488980	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCGTGCGGTTCTGGTACTCGG	0.736	11	26
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	56734654	56734654	+	Nonsense_Mutation	SNP	G	G	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AGCCTTTGCAGAAAAATTGTC	0.393	27	37
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	155176790	155176790	+	Silent	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CAATCAGGCCGTTCAAACCAC	0.408	26	21
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	164271443	164271443	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TAGAGCTCGACGAGTATTATA	0.358	24	41
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	94749822	94749822	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AGGAATCGCTCGCCAGGAAGT	0.463	39	52
SEPT7	989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	35872445	35872445	+	Missense_Mutation	SNP	A	A	G	rs11538083		TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GGATTTGCCAATCTCCCAAAT	0.373	70	95
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	126173579	126173579	+	Silent	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AACTAAGTTCGCGTCCTGAAG	0.458	35	80
TRPV6	55503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142573633	142573633	+	Missense_Mutation	SNP	G	G	A	rs146718533		TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GTGTGCTTCCGCTTCTGCATC	0.522	93	193
TAS2R40	259286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142919653	142919653	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TTTCCTCTCTCGAGAGATGTC	0.458	70	169
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	147259309	147259309	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CTGATGGCAGCGGACCTCTGG	0.398	44	99
DEFA4	1669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	6793553	6793553	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TAATCGACACGCGTGCAGCAG	0.507	74	53
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	125107242	125107242	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ATAGAAACTCGGCCACTGTAC	0.478	18	42
TG	7038	hgsc.bcm.edu;ucsc.edu	37	8	134108459	134108459	+	Missense_Mutation	SNP	G	G	A	rs61730222	byFrequency	TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GCTCCTGGCCGTGAGTGGCCC	0.502	91	152
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144941624	144941624	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GGCGGCCTGCGCCTCCAGCAG	0.667	35	67
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu	37	9	35546640	35546640	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GGGAGCACAAGACCTAATCCC	0.592	7	85
RUSC2	9853	hgsc.bcm.edu;ucsc.edu	37	9	35546856	35546856	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GGTGAGCCAGGACTTGGTGAC	0.562	13	81
RUSC2	9853	hgsc.bcm.edu;ucsc.edu	37	9	35546876	35546876	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCTGTATGATGACAGCATTGG	0.587	11	84
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35548107	35548107	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GGCCCTGCAGCCATGGCCGGG	0.667	15	42
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	44949046	44949046	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TCTTTATGAAGCAAATGTTCC	0.373	16	35
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	89177102	89177102	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCGCTGCGGACGGCCCGGCTG	0.517	38	47
ZCCHC12	170261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	117960229	117960229	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	GCCAGGAAGCGAAAACACACA	0.493	62	96
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	149638772	149638772	+	Silent	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AGCTGAAGGCGTTGGCAGCCA	0.632	61	88
BGN	633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	152773771	152773771	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCATGGGCTTCGGGGTGAAGC	0.617	173	177
ZAN	7455	broad.mit.edu;ucsc.edu	37	7	100377162	100377162	+	RNA	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	CCGCAGGGCGCGGGAAAAGTG	0.642	10	29
SIPA1L3	23094	broad.mit.edu;ucsc.edu	37	19	38572687	38572687	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TCCCCCGGCAGGGCCTTCCTC	0.711	73	161
PI4KA	5297	broad.mit.edu;ucsc.edu	37	22	21083938	21083938	+	Silent	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ACAGCAGCAGCGTCCTGCGCT	0.597	4	4
ZNF41	7592	broad.mit.edu;ucsc.edu	37	X	47307146	47307146	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AGATTTGATCGGTCAGTGAAG	0.448	48	59
DNM1P47	100216544	broad.mit.edu;ucsc.edu	37	15	102312969	102312969	+	RNA	SNP	C	C	T			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TTGGCTCCAGCGGAGTTGAAA	0.572	11	16
MAP7D3	79649	broad.mit.edu;ucsc.edu	37	X	135313709	135313709	+	Silent	SNP	A	A	G			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	AAACCTTTGGAGCGTCTCTCG	0.423	66	102
SNAPIN	23557	broad.mit.edu;hgsc.bcm.edu	37	1	153632019	153632021	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	TGTCTTGGTTAACAACATTCTAC	0.433	47	71
PTAR1	375743	broad.mit.edu;hgsc.bcm.edu	37	9	72349082	72349082	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HT-A5RA-01A-11D-A289-08	TCGA-HT-A5RA-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c72304bb-c1bd-4b35-8fff-116aa6b680f4	947d02d9-a22f-4b5c-9284-06baad55b580	ATCCATGTTTCTGGACTCTTT	0.388	16	16
