Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	26285470	26285470	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	TCTGAAGAGGGGTGAAAGAAT	0.353	14	102
CABP4	57010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	67222946	67222946	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GGCCATTGGCCGTCAGAAGCC	0.642	21	16
DPPA3	359787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7867804	7867804	+	Silent	SNP	G	G	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CCTCCGAGACGTTGATAAAGA	0.453	60	111
FMNL3	91010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	50044648	50044648	+	Missense_Mutation	SNP	T	T	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	TTCAAACTTATCAAGATCCAG	0.512	14	60
SOAT2	8435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	53517583	53517583	+	Missense_Mutation	SNP	T	T	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GACCATGCTGTTTCTAGGCCA	0.577	24	61
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	73012760	73012760	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GCTGCCAGCCGAGCTCTTTAT	0.368	26	71
THSD4	79875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	71535120	71535120	+	Silent	SNP	C	C	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CCCGCCATTCCAGGTCCCAGG	0.567	13	142
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	C	T	rs28934575		TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CGGTTCATGCCGCCCATGCAG	0.577	47	19
USP43	124739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	9631874	9631874	+	Missense_Mutation	SNP	A	A	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	AACAGCAAAGACAGTCGCCGA	0.572	12	34
DBF4B	80174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42828250	42828250	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	TGTTAAGGGCCCACTCCTCTT	0.592	54	119
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	45131229	45131229	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	AATGAGGGTAGATCTCTTAGA	0.398	52	104
HELZ2	85441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	62196772	62196772	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GTCTCTGGCACGAAAGAGCAG	0.701	5	25
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	25457209	25457209	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	TGGCACGCTCCATGACCGGCC	0.557	22	54
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	102835531	102835531	+	Silent	SNP	A	A	G			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	AACGAATCAGAGAAGGGGTGG	0.403	43	101
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu	37	2	107446647	107446647	+	Missense_Mutation	SNP	C	C	T	rs144935783		TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GTTTCTCTGACGATGCTGAAT	0.353	13	161
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	185801555	185801555	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	TAAAAATAAGCCAGACTTAAA	0.343	19	135
FZD5	7855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	208632020	208632020	+	Missense_Mutation	SNP	G	G	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GCGCAGGTGAGCGCCGCCTCC	0.667	7	30
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	ATAAGCATGACGACCTATGAT	0.393	33	71
TMEM40	55287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	12779642	12779642	+	Silent	SNP	T	T	G			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	TACCACTTGCTGGGTCAGAGC	0.557	11	29
CMTM7	112616	hgsc.bcm.edu;broad.mit.edu	37	3	32483476	32483476	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CTTCTACCGCGTGCTCACCTG	0.537	10	130
POGLUT1	56983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	119204196	119204196	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	AGTGGCCATGGAAAAAGAAAA	0.299	14	52
AP2M1	1173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	183898930	183898930	+	Missense_Mutation	SNP	G	G	C			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	TACCTGAGTGGCATGCCTGAA	0.537	35	214
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	30134981	30134981	+	Missense_Mutation	SNP	T	T	C			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CTGGAAGCTCTGAGCACGGAG	0.453	17	76
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32018082	32018082	+	Silent	SNP	G	G	A			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GGGTGGTCTCGGCTTCATCCT	0.597	39	69
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	97246405	97246405	+	Silent	SNP	C	C	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GTATCCGTCGCTTTGTGTGAC	0.478	36	69
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	88964578	88964578	+	Missense_Mutation	SNP	A	A	C			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CTAAAGCACAACTGCTTCTAC	0.383	24	47
BAIAP2L1	55971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	97941545	97941545	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CTCCTGCCACCGAGGCAGCTT	0.448	22	241
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	63412957	63412957	+	Silent	SNP	A	A	G			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CAAAGAAACTAGGCAGAGTAC	0.542	14	73
KIAA1841	84542	broad.mit.edu;ucsc.edu	37	2	61310289	61310289	+	Splice_Site	SNP	G	G	C			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GATTTTTTAGGTTGAACAGTG	0.318	15	41
USP12	219333	broad.mit.edu;ucsc.edu	37	13	27680004	27680004	+	Silent	SNP	C	C	T	rs142426104		TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	GACTCTTATACGCAAGAACTT	0.393	19	70
DAG1	1605	broad.mit.edu;ucsc.edu	37	3	49569023	49569023	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	CCAGTCAGGGATCCTGTTCCT	0.602	36	198
FGFR4	2264	broad.mit.edu;ucsc.edu	37	5	176517585	176517585	+	Missense_Mutation	SNP	G	G	T			TCGA-HW-8321-01A-11D-2395-08	TCGA-HW-8321-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e6d82338-1b8a-4120-9ce1-f50906ed4540	1b40ef43-8209-45a5-9a71-467c400c19e0	ACCTGAGGATGCTGGCCGCTA	0.607	22	91
