Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR4C13	283092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	49974106	49974106	+	Silent	SNP	G	G	T			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	TGCTCATTGTGGTCACCATCA	0.428	131	173
DAGLA	747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	61504678	61504678	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	ACACTACGGCCTGATTGTGGT	0.637	146	189
AMIGO2	347902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	47471391	47471391	+	Missense_Mutation	SNP	T	T	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	AAAACACCACTCTTTTACCTG	0.522	30	7
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	40584082	40584082	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	GGCCAACGCCCCATTGACCTG	0.622	27	14
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578280	7578280	+	Missense_Mutation	SNP	G	G	C			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	ATGCTGAGGAGGGGCCAGACC	0.552	57	10
NT5C	30833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	73127345	73127345	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	CAGGAAAAAGCCCGGGGCTTC	0.652	51	79
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	28993042	28993042	+	Silent	SNP	T	T	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	CTGACCTCCCTTTGCTCGGAC	0.418	74	112
MROH7	374977	hgsc.bcm.edu;broad.mit.edu	37	1	55166019	55166019	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	CAGGTGCGCCGGATCCCCGAG	0.642	4	53
C8A	731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	57341750	57341750	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	TGCCTGAAACGCCACCTTGTG	0.542	18	41
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	68904625	68904625	+	Splice_Site	SNP	C	C	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	CCTTTCTTACCCTTTCCAGCA	0.423	135	224
RSBN1	54665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	114308980	114308980	+	Silent	SNP	G	G	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	TTCTAGGGATGAAGTAGATAT	0.443	41	67
MPZ	4359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	161275672	161275672	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	ACCGCTATTTCTTATCCTTGC	0.592	46	65
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	51872176	51872176	+	Missense_Mutation	SNP	T	T	C	rs35790657		TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	AAGCACAATTTCCATGTTCCA	0.562	35	38
LGALS2	3957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	37966744	37966744	+	Splice_Site	SNP	T	T	C			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	ATTACAAAGCTGCAGGAGAAG	0.527	45	65
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	21225141	21225141	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	TATTCTTCACGAAGGGCCATA	0.363	28	44
ZAP70	7535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	98354121	98354121	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	GACGACAGCTACTACACTGTA	0.637	30	47
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	ATAAGCATGACGACCTATGAT	0.393	33	56
OTOS	150677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	241079506	241079506	+	Splice_Site	SNP	C	C	T			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	GGCTTGGCCCCTGCAAAGGAA	0.572	24	9
RTP2	344892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	187416395	187416395	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	GCCGGATCCCGCCTGGGCCCT	0.612	54	86
GPR78	27201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	8583134	8583134	+	Missense_Mutation	SNP	T	T	G			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	GGCGCTGCACTTGGCTGCTCG	0.711	15	27
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	67591097	67591097	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	CAAACGTATGAACAGCATTAA	0.373	57	63
ANKRD34B	340120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	79854526	79854526	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	AACACTGTGATCTAAAGGGAA	0.453	75	117
STX11	8676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	144508400	144508400	+	Silent	SNP	C	C	T			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	GCCGCCACCGCGAACTGCTGC	0.637	40	14
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144392244	144392244	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	GCACCAGGCAATGCTGATCCT	0.627	59	92
KRT15	3866	broad.mit.edu;ucsc.edu	37	17	39673389	39673389	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	CAGGATGACCCGGGAGTTGTC	0.597	59	122
EPPK1	83481	broad.mit.edu;ucsc.edu	37	8	144942913	144942913	+	Silent	SNP	G	G	A			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	TGGTGACTGCGCTGACCACCT	0.687	4	8
ATRX	546	broad.mit.edu	37	X	76919034	76919035	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-P5-A5EU-01A-11D-A27K-08	TCGA-P5-A5EU-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	090094cb-6e22-4409-938a-11d3107c33ef	f66ea56c-7053-4147-bb40-9cab955d5957	CAGAATTGACTTGATTTTTTGC	0.361	9	2
