Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NUP98	4928	hgsc.bcm.edu;broad.mit.edu	37	11	3697451	3697451	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	AGTTCGTCCATGGCATAGTCC	0.582	11	129
FBXL3	26224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	77581815	77581815	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	ATGTTCTAATCGAACATGTTT	0.418	23	49
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	79749239	79749239	+	Silent	SNP	C	C	T			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CATTTGTGGTCCAGTCCTGTG	0.473	27	84
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56388978	56388978	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CCGGACACCGTTGGATGTGCC	0.602	41	97
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40901791	40901791	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CTCAGCACCCGCCTCGCCTGG	0.587	11	115
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	35445831	35445831	+	Silent	SNP	G	G	T			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	TCTTCTTATCGGCCTTCCCCA	0.458	8	6
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	113089666	113089666	+	Silent	SNP	A	A	G			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	ACGGTTCATCATCCACATCAG	0.443	16	25
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179410161	179410161	+	Silent	SNP	A	A	G			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CGCTGGGCTCACTGTTACCAG	0.468	51	92
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	ATAAGCATGACGACCTATGAT	0.393	17	59
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	13603085	13603085	+	Silent	SNP	G	G	A			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CAAAGCCTTCGCTGCTATCTT	0.488	24	189
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	142397180	142397180	+	Missense_Mutation	SNP	T	T	A			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CGTTTCCGTGTTTCCATCTGC	0.388	25	59
WIPI2	26100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	5256804	5256804	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	GCAGGTCTTCGATACCATTAA	0.527	20	45
COA1	55744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	43687182	43687182	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	TAGAACACACCGTGGAAAAGG	0.493	37	79
CROT	54677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	87005181	87005181	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CCAGAGAACTTGGCTTTGTTA	0.368	11	40
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	114294061	114294061	+	Missense_Mutation	SNP	A	A	T			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CATCTCCCAAACCtgtaagtg	0.393	31	85
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142638440	142638440	+	Nonsense_Mutation	SNP	G	G	A			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CCGTGGACTCGGAGGTGTGGA	0.622	60	145
BARX1	56033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	96714489	96714489	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CGGCACCTCCGCCGGTTTCTC	0.682	19	34
MAGEB1	4112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	30269583	30269583	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	TAGAGCCAGGCGTCGCACTAC	0.527	43	93
KIF4A	24137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	69615591	69615591	+	Missense_Mutation	SNP	T	T	G			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	AATGACCTCCTTGAAGATAGA	0.438	41	57
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	79942476	79942476	+	Silent	SNP	A	A	G			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	TACACTTTAAAGACTGTCTTC	0.383	14	43
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	123519691	123519691	+	Missense_Mutation	SNP	G	G	C			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	TCTGCGCCCTGTCCCCAGATG	0.483	63	119
ZNF551	90233	broad.mit.edu;ucsc.edu	37	19	58197953	58197953	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	AACTCACCTCAGTGAGATTAA	0.478	64	53
CLDN11	5010	broad.mit.edu;ucsc.edu	37	3	170141061	170141061	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CCAGGAGCCCGGTGTGGCTAA	0.602	54	116
KIAA1429	25962	broad.mit.edu;hgsc.bcm.edu	37	8	95541443	95541445	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	ctccttcttcttgttgttcctct	0.438	10	28
MPRIP	23164	broad.mit.edu;hgsc.bcm.edu	37	17	17046885	17046886	+	Frame_Shift_Ins	INS	-	-	C			TCGA-P5-A5EX-01A-12D-A289-08	TCGA-P5-A5EX-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42140289-18f9-445b-9f13-4f62850e9d4c	469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1	CACCAATGAAGCCCCCCCAGCT	0.649	18	51
