Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	7679258	7679258	+	Silent	SNP	C	C	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	ATGCGATGCCCGCGCTCTCCA	0.657	61	128
TEAD1	7003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	12883803	12883803	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TCAGGTAGGAATGAATTGATA	0.403	7	61
OR4C16	219428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55339694	55339694	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TATTTTTTTGCGTCTCTACTT	0.373	47	87
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	111229622	111229622	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	GGCCGGGGCTGGGGCTTGCTC	0.632	18	33
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	8976368	8976368	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CGGGTGTCGGGAGTTGGAAAT	0.527	75	126
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	24858319	24858319	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TGGATGACAACGgtagtgagg	0.493	19	12
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	23695207	23695207	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	AACCCCGTGGCCGCCTCCCTC	0.557	57	579
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	35504508	35504508	+	Silent	SNP	C	C	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	GGGCAGCTGACCGCAGCCAGG	0.662	26	25
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42791828	42791828	+	Nonsense_Mutation	SNP	G	G	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	GCGAGTGGTGGTATGCCCTGG	0.617	37	54
CIC	23152	hgsc.bcm.edu;broad.mit.edu	37	19	42796879	42796879	+	Nonsense_Mutation	SNP	C	C	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CCAGCCATCCCAGGCCCCCCC	0.682	6	85
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152191766	152191766	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	GGACCCATGTCGGACACGGCT	0.602	38	85
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	177936856	177936856	+	Silent	SNP	G	G	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CTTCGTAATAGTCAACTCCAG	0.517	9	68
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	247588165	247588165	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CTCTTTGGCTGCAGATGGAAT	0.582	11	30
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	26426943	26426943	+	Missense_Mutation	SNP	T	T	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TTTGAACACTTGTTGCTGTCC	0.483	166	359
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	84784902	84784902	+	Nonsense_Mutation	SNP	T	T	G			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	AACACTGTGTTATCAGTTCCT	0.343	46	118
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	ATAAGCATGACGACCTATGAT	0.393	21	51
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	222301821	222301821	+	Missense_Mutation	SNP	G	G	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CATGTACTCTGTTATGATCAT	0.378	36	61
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178917478	178917478	+	Splice_Site	SNP	G	G	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TTTATTAAAGGTTTTGCTATC	0.338	33	42
TSSK1B	83942	hgsc.bcm.edu;broad.mit.edu	37	5	112770050	112770050	+	Missense_Mutation	SNP	G	G	A	rs139028259	by1000genomes	TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CTGTCATCCCGCAGGCAGCGC	0.577	4	68
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140306487	140306487	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	GATGGTGGGCTGTGGGGTGGC	0.647	15	66
UTRN	7402	hgsc.bcm.edu;broad.mit.edu	37	6	144835787	144835787	+	Splice_Site	SNP	G	G	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TATAATTAGCGTTTAGTATCT	0.388	11	117
PSPH	5723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	56084931	56084931	+	Missense_Mutation	SNP	A	A	C			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TCTTACCGTTAAAGTAGAATT	0.383	40	33
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	131479035	131479035	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	GCCTGTACTGCGAGAAGCGGA	0.602	18	171
GPR15	2838	broad.mit.edu;ucsc.edu	37	3	98251295	98251295	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	GTGGCCAGTCGTATCCAGGAA	0.522	8	64
CEP63	80254	broad.mit.edu;ucsc.edu	37	3	134277174	134277174	+	Missense_Mutation	SNP	A	A	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	ACTGAGTTCAAGAATACAGAG	0.289	9	36
USP8	9101	broad.mit.edu;ucsc.edu	37	15	50769066	50769066	+	Silent	SNP	G	G	C			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	AAACTGTCCTGCGCAATGAGC	0.393	30	70
NACA2	342538	broad.mit.edu;ucsc.edu	37	17	59668211	59668211	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CTCTTGTAGACGTCCAGTTTT	0.443	80	202
ZFX	7543	broad.mit.edu;hgsc.bcm.edu	37	X	24229107	24229109	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	TTCAGAACTCAAGAAACACGTGG	0.424	15	52
NOTCH1	4851	broad.mit.edu	37	9	139412283	139412285	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	AGACGCACTCGTTGACGTCGATC	0.66	13	113
CIC	23152	broad.mit.edu	37	19	42795615	42795615	+	Frame_Shift_Del	DEL	A	A	-			TCGA-P5-A5F0-01A-11D-A289-08	TCGA-P5-A5F0-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4	a5d89ce8-081f-4b72-993d-47b28b7bf6e3	CCCACCCCCCAAAGGTGAGAC	0.617	18	120
