Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	129869084	129869084	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	ATTGACAAATGTCCGGATCAT	0.522	10	38
OR5T3	390154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56020474	56020474	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	AAGGCAAAAGGCCTTCTCTAC	0.423	29	138
CNOT2	4848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	70726595	70726595	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	GAATGAATAACTCCTTATCAA	0.318	31	66
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	58207144	58207144	+	Missense_Mutation	SNP	G	G	C			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	CCCCTCACCAGCGCACATGAC	0.642	7	50
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	56921899	56921899	+	Silent	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	AGAACTGGCAGTCGGCTCACC	0.587	11	104
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	GCACAAACACGCACCTCAAAG	0.542	28	12
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56355276	56355276	+	Silent	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	GGGCCCGGCCGTTGTCTTGGA	0.652	43	59
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	62036690	62036690	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	ACCAGGCTGAGGGTGACGATG	0.562	13	55
IL27RA	9466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	14157389	14157389	+	Nonsense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	AAACTCAACTGGGTCCGGCTT	0.632	60	124
PADI2	11240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	17418910	17418910	+	Silent	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	CACTCTCCACGTAGAACACGC	0.577	30	41
ARHGEF2	9181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	155920805	155920805	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	TCACTCTCCCGGAGCCGGGCC	0.706	17	15
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	102968090	102968090	+	Silent	SNP	C	C	T	rs112596146		TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	AGTTTGCCTACGAGCAGGAGG	0.527	33	60
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	ATAAGCATGACGACCTATGAT	0.393	23	38
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu	37	2	240111713	240111713	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	GTGGTCCAGGCGCAGGTCCAT	0.667	7	61
DPPA2	151871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	109023364	109023364	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	TTCTATGCCTGGGGATGGGAA	0.473	41	48
SERPINI1	5274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	167508340	167508340	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	TTCAGTCAAAATGTAGCCGTG	0.363	13	58
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	23830190	23830190	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	TTGCTGTTGACAAATACTCTT	0.408	40	99
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	173873279	173873279	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	TCCACGGGGGACATCTCTGCC	0.567	37	82
PCDHGA2	56113	hgsc.bcm.edu;broad.mit.edu	37	5	140719479	140719479	+	Missense_Mutation	SNP	T	T	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	GATGCTACATTCCATGAAATT	0.428	18	275
IRF4	3662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	407544	407544	+	Silent	SNP	C	C	T			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	CAGAACACATCAGCAATCCAG	0.358	18	54
FKBP5	2289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	35547956	35547956	+	Missense_Mutation	SNP	C	C	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	AACCAGGACACTATCTTCCCA	0.433	27	163
FAM129B	64855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	130293979	130293979	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	AATCTCATGGCGCATGCTGTT	0.577	22	105
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	139396809	139396809	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	GGGAACCAGAGCTGGCCATGC	0.672	11	60
PHF16	9767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	46887419	46887419	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	TGATGAAGATGTGATCTGTGA	0.448	27	61
GUCY2F	2986	hgsc.bcm.edu;broad.mit.edu	37	X	108718947	108718947	+	Missense_Mutation	SNP	C	C	A			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	GCGCAGCAACCTCAGGCAGGG	0.517	15	205
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76920192	76920193	+	Frame_Shift_Ins	INS	-	-	TCATCAT			TCGA-P5-A5F2-01A-11D-A289-08	TCGA-P5-A5F2-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37d51361-c4ad-4907-b18f-66991749ba1f	666497c6-2a20-4949-9a09-13e17e2a00f9	CTTCTTCTGGCTCATCATCTGA	0.351	27	71
