Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PWWP2B	170394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	134218474	134218474	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	CGTCTGTCCCGCAACCGCGAC	0.726	14	23
OR5AS1	219447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55798589	55798589	+	Missense_Mutation	SNP	G	G	T			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	AAGTCCTCAGGTGGCAGAAGC	0.453	67	115
ZC3H13	23091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	46619598	46619598	+	Silent	SNP	A	A	G			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	TATCAGATATAGTCTTGGTAT	0.413	53	107
C15orf43	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45248953	45248953	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	TTGCGGCAGCGTTAGCCAGGA	0.582	33	87
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	48296697	48296697	+	Missense_Mutation	SNP	A	A	C			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	AGACTCAAAAAAATGCCTCAG	0.348	9	21
PSME3	10197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40990763	40990763	+	Nonsense_Mutation	SNP	C	C	T			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	AATGTGGGTACAGCTCCTGAT	0.463	31	55
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	6155592	6155592	+	Missense_Mutation	SNP	G	G	T			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	CTCTTCAGGAGTGGGCGCCAT	0.632	48	42
CD40	958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	44751286	44751286	+	Silent	SNP	A	A	G			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	GCACCTCAGAAACAGACACCA	0.607	41	87
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu	37	2	183866755	183866755	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	TGGCCAAGGCGTGGGTATTCT	0.363	8	80
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	187371527	187371527	+	Missense_Mutation	SNP	C	C	G			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	TGTAGCCAGTCTTGAAAGATT	0.348	24	67
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	189898826	189898826	+	Silent	SNP	G	G	A	rs142895373		TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	CAATTTCAACGCCGAATTCCT	0.473	24	56
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	ATAAGCATGACGACCTATGAT	0.393	23	47
SCAND3	114821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	28540332	28540332	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	agatcattaaaaatactgaag	0.353	20	42
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	82578793	82578793	+	Splice_Site	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	CACTCTTACCGTATAGCCCTC	0.463	68	171
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	127631024	127631024	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	AGAGGAGCCCGAAACCTCCCA	0.542	13	29
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	117848575	117848575	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	TTCACACAGCGGCCGTGCTGG	0.582	92	201
MID1IP1	58526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	38664318	38664318	+	Missense_Mutation	SNP	A	A	T			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	TTGCTGCGCGACGTGCCCCTG	0.632	32	53
NOTCH2	4853	broad.mit.edu;ucsc.edu	37	1	120491184	120491184	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	ATGGTACACCGCTGACCTAGG	0.512	29	33
UNC13D	201294	broad.mit.edu;ucsc.edu	37	17	73826535	73826535	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	GACTGTCACAGCCCCCAGCTC	0.682	5	9
TRPV6	55503	broad.mit.edu;ucsc.edu	37	7	142571891	142571891	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	GTCGCCAAAAATCATCTAGAA	0.547	5	37
HYLS1	219844	broad.mit.edu;ucsc.edu	37	11	125770123	125770123	+	Missense_Mutation	SNP	T	T	C			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	GCAAATGGTGTCATACCCAGG	0.403	28	45
STAG3L4	64940	broad.mit.edu;ucsc.edu	37	7	66771046	66771046	+	RNA	SNP	T	T	G			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	TGTTAACTTTTTCATCTGATC	0.388	52	84
CIC	23152	broad.mit.edu;ucsc.edu	37	19	42799059	42799059	+	Missense_Mutation	SNP	C	C	T			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	CCGTGAGGTGCGCCAGAAGAT	0.632	23	51
XG	7499	broad.mit.edu;hgsc.bcm.edu	37	X	2670333	2670333	+	Frame_Shift_Del	DEL	A	A	-			TCGA-QH-A65V-01A-11D-A29Q-08	TCGA-QH-A65V-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03328f23-41c2-42b8-8c9c-1824338aa98b	f5978804-96d3-4d66-92a0-b3075996bc9e	GCTGGTGGGGACTTCCCTGTC	0.532	47	127
